# HG changeset patch
# User yhoogstrate
# Date 1459410203 14400
# Node ID a6b5d3d4825c88bd6725c1894f6a3f28242dc7fd

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit d7ca394c8959cf2a0d9c38fa4de309be99c73280-dirty

diff -r 000000000000 -r a6b5d3d4825c tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Mar 31 03:43:23 2016 -0400
@@ -0,0 +1,68 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="boost" version="1.57">
+        <repository changeset_revision="a0dd39685fce" name="package_boost_1_57" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    
+    <package name="cmake" version="3.2.3">
+        <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    
+    <package name="python" version="2.7.10">
+        <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    
+    <package name="segmentation-fold" version="1.6.2">
+        <install version="1.0">
+            <actions>
+                <action sha256sum="6c7c1e21413a9841fd4822e1ff85e3b44a7684117617e1388c515475f7c1869b" type="download_by_url">https://github.com/yhoogstrate/segmentation-fold/archive/v1.6.3.tar.gz</action>
+                    
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="a0dd39685fce" name="package_boost_1_57" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="boost" version="1.57" />
+                    </repository>
+                </action>
+                
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="cmake" version="3.2.3" />
+                    </repository>
+                </action>
+                
+                <action type="shell_command">
+                    cmake -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR .  &amp;&amp;
+                    make                                                                    &amp;&amp;
+                    make check                                                              &amp;&amp;
+                    make install
+                </action>
+                
+                <!-- Also install the python utils -->
+                <action type="set_environment_for_install">
+                     <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="python" version="2.7.10" />
+                    </repository>
+                </action>
+                <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                <action type="make_directory">$INSTALL_DIR/lib64/python</action>
+                <action type="shell_command">
+                    export PYTHONPATH="$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python"  &amp;&amp;
+                    cd scripts/energy-estimation-utility                                               &amp;&amp;
+                    python setup.py install --home "$INSTALL_DIR" --install-scripts "$INSTALL_DIR/bin"
+                </action>
+                
+                <action type="set_environment">
+                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="set_to" name="SEGMENTATION_FOLD_DEFAULT_XML">$INSTALL_DIR/share/segmentation-fold/segments.xml</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Installation of segmentation-fold requires:
+             - libboost                     (via toolshed)
+             - CMake                        (via toolshed)
+             - Python (for energy utils)    (via toolshed)
+             - c++11 compliant compiler: g++ or clang
+        </readme>
+    </package>
+</tool_dependency>