Mercurial > repos > yhoogstrate > segmentation_fold
comparison test-data/SNORD48-revised.scan-for-segments.txt @ 6:4d16cf9414cf draft default tip
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/segmentation_fold commit 3a3c1d069e0a079d8ea7c0b4ac856ef24141b1aa
| author | erasmus-medical-center |
|---|---|
| date | Fri, 24 Feb 2017 04:18:22 -0500 |
| parents | 63df1e23f4ff |
| children |
comparison
equal
deleted
inserted
replaced
| 5:b7cf9b172cfe | 6:4d16cf9414cf |
|---|---|
| 1 >SNORD48 revised (2 extra bases on 5' end) x Kt-42.dra | |
| 2 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 3 >SNORD48 revised (2 extra bases on 5' end) x Kt-42.eco | |
| 4 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 5 >SNORD48 revised (2 extra bases on 5' end) x Loop-E-Motif.bac | |
| 6 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 7 >SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.UAU | |
| 8 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 9 >SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.UGU | |
| 10 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 11 >SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.CAU | |
| 12 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 13 >SNORD48 revised (2 extra bases on 5' end) x Kt-42.tth | |
| 14 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 15 >SNORD48 revised (2 extra bases on 5' end) x Kt-G2nA-SAM-riboswitch (T. tengcongensi) | |
| 16 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 1 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 G2nA SAM riboswitch (H. marismortui) | 17 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 G2nA SAM riboswitch (H. marismortui) |
| 2 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | 18 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC |
| 3 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 (T. thermophilus) | 19 >SNORD48 revised (2 extra bases on 5' end) x Kt-15.hma |
| 20 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 21 >SNORD48 revised (2 extra bases on 5' end) x Kt-U4b.hsa | |
| 22 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 23 >SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.GGU | |
| 4 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | 24 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC |
| 5 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 (E. coli) | 25 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 (E. coli) |
| 6 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | 26 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC |
| 7 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 (D. radiodurans) | 27 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 (D. radiodurans) |
| 8 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | 28 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC |
| 9 >SNORD48 revised (2 extra bases on 5' end) x Kt-11 (T. thermophilus) | 29 >SNORD48 revised (2 extra bases on 5' end) x Kt-58.hma |
| 10 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | 30 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC |
| 11 >SNORD48 revised (2 extra bases on 5' end) x Kt-11.eco | 31 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.tth |
| 12 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | 32 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC |
| 13 >SNORD48 revised (2 extra bases on 5' end) x Kt-15.hma | 33 >SNORD48 revised (2 extra bases on 5' end) x Kt-SAM-ribo.tte |
| 14 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 15 >SNORD48 revised (2 extra bases on 5' end) x Kt-23.tth | |
| 16 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | 34 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC |
| 17 >SNORD48 revised (2 extra bases on 5' end) x Kt-23.eco | 35 >SNORD48 revised (2 extra bases on 5' end) x Kt-23.eco |
| 18 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | 36 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC |
| 19 >SNORD48 revised (2 extra bases on 5' end) x Kt-38.hma | 37 >SNORD48 revised (2 extra bases on 5' end) x Kt-38.hma |
| 20 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | 38 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC |
| 39 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.dra | |
| 40 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 41 >SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.CGU | |
| 42 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 43 >SNORD48 revised (2 extra bases on 5' end) x Kt-T-box.bsu | |
| 44 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 45 >SNORD48 revised (2 extra bases on 5' end) x Kt-23.tth | |
| 46 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 47 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.eco | |
| 48 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 49 >SNORD48 revised (2 extra bases on 5' end) x Kt-c-di-GMP-II.cac | |
| 50 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 51 >SNORD48 revised (2 extra bases on 5' end) x Kt-11 (T. thermophilus) | |
| 52 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 53 >SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.AAU | |
| 54 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 55 >SNORD48 revised (2 extra bases on 5' end) x Kt-L30e.sce | |
| 56 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 57 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 (T. thermophilus) | |
| 58 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 21 >SNORD48 revised (2 extra bases on 5' end) x Kt-42.hma | 59 >SNORD48 revised (2 extra bases on 5' end) x Kt-42.hma |
| 22 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | 60 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC |
| 23 >SNORD48 revised (2 extra bases on 5' end) x Kt-42.tth | 61 >SNORD48 revised (2 extra bases on 5' end) x Kt-U4a.hsa |
| 24 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | 62 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC |
| 25 >SNORD48 revised (2 extra bases on 5' end) x Kt-42.dra | 63 >SNORD48 revised (2 extra bases on 5' end) x Kt-G2nA-SAMribo.bsu |
| 26 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | 64 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC |
| 27 >SNORD48 revised (2 extra bases on 5' end) x Kt-42.eco | 65 >SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.GAU |
| 66 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 67 ((((((.((.((((((((((.....)))).).).)))).((((...))))...)).)))))).... (((((...(((((((...))).....))))).....(((((............))))))))).... -10.9268188477 | |
| 68 >SNORD48 revised (2 extra bases on 5' end) x Kt-11.eco | |
| 28 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | 69 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC |
| 29 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.hma | 70 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.hma |
| 30 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | 71 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC |
| 31 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.tth | 72 >SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.AGU |
| 32 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | 73 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC |
| 33 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.dra | 74 ((((((.((.((((((((((.....)))).).).)))).((((...))))...)).)))))).... ((...(((((..((..((((.....)))).))((((.((((((...))))..)).))))))))))) -1.84698486328 |
| 34 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 35 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.eco | |
| 36 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 37 >SNORD48 revised (2 extra bases on 5' end) x Kt-58.hma | |
| 38 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 39 >SNORD48 revised (2 extra bases on 5' end) x Kt-U4a.hsa | |
| 40 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 41 >SNORD48 revised (2 extra bases on 5' end) x Kt-U4b.hsa | |
| 42 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 43 >SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.CGU | |
| 44 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 45 >SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.UGU | |
| 46 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 47 >SNORD48 revised (2 extra bases on 5' end) x Kt-L30e.sce | |
| 48 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 49 >SNORD48 revised (2 extra bases on 5' end) x Kt-SAM-ribo.tte | |
| 50 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 51 >SNORD48 revised (2 extra bases on 5' end) x Kt-T-box.bsu | |
| 52 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 53 >SNORD48 revised (2 extra bases on 5' end) x Kt-c-di-GMP-II.cac | |
| 54 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC | |
| 55 >SNORD48 revised (2 extra bases on 5' end) x Kt-G2nA-SAM-riboswitch (T. tengcongensi) | |
| 56 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC |