comparison macros.xml @ 6:4d16cf9414cf draft default tip

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/segmentation_fold commit 3a3c1d069e0a079d8ea7c0b4ac856ef24141b1aa

5:b7cf9b172cfe

<macros>
    <token name="@VERSION@">smf-v1.6-5_utils-v2.1.0</token>

    <xml name="stdio">
        <stdio>
            <exit_code range="1:" />
            <exit_code range=":-1" />
        </stdio>
    </xml>

    <token name="@VERSION_COMMAND_SMF@">segmentation-fold --version | head -n 2 | tail -n 1 | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//'</token>
    <token name="@VERSION_COMMAND_UTILS@">segmentation-fold-utils --version</token>


    <token name="@REQUIREMENTS_UTILS@"><![CDATA[
        <requirement type="package" version="2.7.10">python</requirement>
        <requirement type="package" version="1.9">numpy</requirement>
        <requirement type="package" version="0.8.2.1">pysam</requirement>
        <requirement type="package" version="0.6.1">htseq</requirement>
        <requirement type="package" version="2.1.0">segmentation-fold-utils</requirement>
    ]]></token>

    <token name="@REQUIREMENTS_SMF@"><![CDATA[
        <requirement type="package" version="1.6.5">segmentation-fold</requirement>
    ]]></token>


    <xml name="citations">
        <citations>
            <citation type="bibtex">
               @mastersthesis{mastersthesis,
                  author       = {Youri Hoogstrate}, 

6:4d16cf9414cf

<macros>
    <token name="@VERSION@">smf-v1.7-0_utils-v2.1.1</token>

    <xml name="stdio">
        <stdio>
            <exit_code range="1:" />
            <exit_code range=":-1" />
        </stdio>
    </xml>

    <xml name="version_command">
        <version_command>echo $(segmentation-fold --version | head -n 2 | tail -n 1 | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//')", "$(segmentation-fold-utils --version)</version_command>
    </xml>

    <xml name="requirements">
        <requirements>
            <requirement type="package" version="1.7.0">segmentation-fold</requirement><!-- includes utils -->
        </requirements>
    </xml>
    
    <xml name="citations">
        <citations>
            <citation type="bibtex">
               @mastersthesis{mastersthesis,
                  author       = {Youri Hoogstrate},