Mercurial > repos > yhoogstrate > segmentation_fold

comparison test-data/SNORD114-4-revised.scan-for-segments.txt @ 6:4d16cf9414cf draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/segmentation_fold commit 3a3c1d069e0a079d8ea7c0b4ac856ef24141b1aa
author erasmus-medical-center
date Fri, 24 Feb 2017 04:18:22 -0500
parents 63df1e23f4ff
children
comparison
equal deleted inserted replaced
5:b7cf9b172cfe 6:4d16cf9414cf
1 >SNORD114-4 revised x Kt-42.dra
2 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
3 >SNORD114-4 revised x Kt-42.eco
4 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
5 >SNORD114-4 revised x Loop-E-Motif.bac
6 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
7 >SNORD114-4 revised x Kt-CD-box.UAU
8 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
9 >SNORD114-4 revised x Kt-CD-box.UGU
10 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
11 >SNORD114-4 revised x Kt-CD-box.CAU
12 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
13 >SNORD114-4 revised x Kt-42.tth
14 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
15 >SNORD114-4 revised x Kt-G2nA-SAM-riboswitch (T. tengcongensi)
16 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
1 >SNORD114-4 revised x Kt-7 G2nA SAM riboswitch (H. marismortui) 17 >SNORD114-4 revised x Kt-7 G2nA SAM riboswitch (H. marismortui)
2 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA 18 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
3 >SNORD114-4 revised x Kt-7 (T. thermophilus) 19 >SNORD114-4 revised x Kt-15.hma
20 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
21 .(((((((((.......)))))).((.((((..((..((((((..........)))))).))..))))..))))) .((((((....(((.((.....((((......))))((....))...)...))))...(((....))).)))))) -6.42471313477
22 >SNORD114-4 revised x Kt-U4b.hsa
23 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
24 >SNORD114-4 revised x Kt-CD-box.GGU
4 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA 25 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
5 >SNORD114-4 revised x Kt-7 (E. coli) 26 >SNORD114-4 revised x Kt-7 (E. coli)
6 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA 27 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
7 >SNORD114-4 revised x Kt-7 (D. radiodurans) 28 >SNORD114-4 revised x Kt-7 (D. radiodurans)
8 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA 29 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
9 >SNORD114-4 revised x Kt-11 (T. thermophilus) 30 >SNORD114-4 revised x Kt-58.hma
10 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA 31 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
11 >SNORD114-4 revised x Kt-11.eco 32 >SNORD114-4 revised x Kt-46.tth
12 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA 33 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
13 >SNORD114-4 revised x Kt-15.hma 34 >SNORD114-4 revised x Kt-SAM-ribo.tte
14 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
15 .(((((((((.......)))))).((.((((..((..((((((..........)))))).))..))))..))))) .((((((....(((.((.....((((......))))((....))...)...))))...(((....))).)))))) -6.42471313477
16 >SNORD114-4 revised x Kt-23.tth
17 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA 35 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
18 >SNORD114-4 revised x Kt-23.eco 36 >SNORD114-4 revised x Kt-23.eco
19 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA 37 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
20 >SNORD114-4 revised x Kt-38.hma 38 >SNORD114-4 revised x Kt-38.hma
21 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA 39 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
40 >SNORD114-4 revised x Kt-46.dra
41 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
42 >SNORD114-4 revised x Kt-CD-box.CGU
43 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
44 >SNORD114-4 revised x Kt-T-box.bsu
45 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
46 >SNORD114-4 revised x Kt-23.tth
47 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
48 >SNORD114-4 revised x Kt-46.eco
49 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
50 >SNORD114-4 revised x Kt-c-di-GMP-II.cac
51 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
52 >SNORD114-4 revised x Kt-11 (T. thermophilus)
53 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
54 >SNORD114-4 revised x Kt-CD-box.AAU
55 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
56 >SNORD114-4 revised x Kt-L30e.sce
57 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
58 >SNORD114-4 revised x Kt-7 (T. thermophilus)
59 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
22 >SNORD114-4 revised x Kt-42.hma 60 >SNORD114-4 revised x Kt-42.hma
23 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA 61 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
24 >SNORD114-4 revised x Kt-42.tth 62 >SNORD114-4 revised x Kt-U4a.hsa
25 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA 63 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
26 >SNORD114-4 revised x Kt-42.dra 64 >SNORD114-4 revised x Kt-G2nA-SAMribo.bsu
27 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA 65 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
28 >SNORD114-4 revised x Kt-42.eco 66 >SNORD114-4 revised x Kt-CD-box.GAU
67 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
68 >SNORD114-4 revised x Kt-11.eco
29 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA 69 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
30 >SNORD114-4 revised x Kt-46.hma 70 >SNORD114-4 revised x Kt-46.hma
31 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA 71 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
32 >SNORD114-4 revised x Kt-46.tth 72 >SNORD114-4 revised x Kt-CD-box.AGU
33 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA 73 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
34 >SNORD114-4 revised x Kt-46.dra 74 .(((((((((.......)))))).((.((((..((..((((((..........)))))).))..))))..))))) .((((((...(((((.......((((......)))).((((((..........)))))).....))))))))))) 2.00271606445
35 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
36 >SNORD114-4 revised x Kt-46.eco
37 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
38 >SNORD114-4 revised x Kt-58.hma
39 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
40 >SNORD114-4 revised x Kt-U4a.hsa
41 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
42 >SNORD114-4 revised x Kt-U4b.hsa
43 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
44 >SNORD114-4 revised x Kt-CD-box.CGU
45 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
46 >SNORD114-4 revised x Kt-CD-box.UGU
47 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
48 >SNORD114-4 revised x Kt-L30e.sce
49 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
50 >SNORD114-4 revised x Kt-SAM-ribo.tte
51 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
52 >SNORD114-4 revised x Kt-T-box.bsu
53 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
54 >SNORD114-4 revised x Kt-c-di-GMP-II.cac
55 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA
56 >SNORD114-4 revised x Kt-G2nA-SAM-riboswitch (T. tengcongensi)
57 CUGAGCCAGUGAUGAAAACUGGUGGCAUAGAAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCA