Mercurial > repos > yhoogstrate > segmentation_fold
comparison test-data/SNORD118-revised.scan-for-segments.txt @ 6:4d16cf9414cf draft default tip
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/segmentation_fold commit 3a3c1d069e0a079d8ea7c0b4ac856ef24141b1aa
| author | erasmus-medical-center |
|---|---|
| date | Fri, 24 Feb 2017 04:18:22 -0500 |
| parents | 63df1e23f4ff |
| children |
comparison
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| 5:b7cf9b172cfe | 6:4d16cf9414cf |
|---|---|
| 1 >SNORD118 revised x Kt-42.dra | |
| 2 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 3 >SNORD118 revised x Kt-42.eco | |
| 4 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 5 >SNORD118 revised x Loop-E-Motif.bac | |
| 6 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 7 >SNORD118 revised x Kt-CD-box.UAU | |
| 8 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 9 >SNORD118 revised x Kt-CD-box.UGU | |
| 10 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 11 >SNORD118 revised x Kt-CD-box.CAU | |
| 12 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 13 .(((.((.(.(((.(((((((((.((.((((.....)))).)))))))(((((((...........))))))).)))).)))).))))) .(((...((((((.(((((((((.((.((((.....)))).)))))))(((((((...........))))))).)))).))))))))). 3.36520385742 | |
| 14 >SNORD118 revised x Kt-42.tth | |
| 15 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 16 >SNORD118 revised x Kt-G2nA-SAM-riboswitch (T. tengcongensi) | |
| 17 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 1 >SNORD118 revised x Kt-7 G2nA SAM riboswitch (H. marismortui) | 18 >SNORD118 revised x Kt-7 G2nA SAM riboswitch (H. marismortui) |
| 2 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 19 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 3 >SNORD118 revised x Kt-7 (T. thermophilus) | 20 >SNORD118 revised x Kt-15.hma |
| 21 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 22 >SNORD118 revised x Kt-U4b.hsa | |
| 23 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 24 >SNORD118 revised x Kt-CD-box.GGU | |
| 4 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 25 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 5 >SNORD118 revised x Kt-7 (E. coli) | 26 >SNORD118 revised x Kt-7 (E. coli) |
| 6 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 27 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 7 >SNORD118 revised x Kt-7 (D. radiodurans) | 28 >SNORD118 revised x Kt-7 (D. radiodurans) |
| 8 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 29 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 9 >SNORD118 revised x Kt-11 (T. thermophilus) | 30 >SNORD118 revised x Kt-58.hma |
| 10 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 31 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 11 >SNORD118 revised x Kt-11.eco | 32 >SNORD118 revised x Kt-46.tth |
| 12 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 33 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 13 >SNORD118 revised x Kt-15.hma | 34 >SNORD118 revised x Kt-SAM-ribo.tte |
| 14 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 15 >SNORD118 revised x Kt-23.tth | |
| 16 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 35 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 17 >SNORD118 revised x Kt-23.eco | 36 >SNORD118 revised x Kt-23.eco |
| 18 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 37 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 19 >SNORD118 revised x Kt-38.hma | 38 >SNORD118 revised x Kt-38.hma |
| 20 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 39 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 21 >SNORD118 revised x Kt-42.hma | |
| 22 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 23 >SNORD118 revised x Kt-42.tth | |
| 24 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 25 >SNORD118 revised x Kt-42.dra | |
| 26 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 27 >SNORD118 revised x Kt-42.eco | |
| 28 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 29 >SNORD118 revised x Kt-46.hma | |
| 30 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 31 >SNORD118 revised x Kt-46.tth | |
| 32 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 33 >SNORD118 revised x Kt-46.dra | 40 >SNORD118 revised x Kt-46.dra |
| 34 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 35 >SNORD118 revised x Kt-46.eco | |
| 36 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 37 >SNORD118 revised x Kt-58.hma | |
| 38 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 39 >SNORD118 revised x Kt-U4a.hsa | |
| 40 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 41 >SNORD118 revised x Kt-U4b.hsa | |
| 42 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 41 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 43 >SNORD118 revised x Kt-CD-box.CGU | 42 >SNORD118 revised x Kt-CD-box.CGU |
| 44 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 43 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 45 .(((.((.(.(((.(((((((((.((.((((.....)))).)))))))(((((((...........))))))).)))).)))).))))) (((((...((((((............))...))))...))......(((((((((...........))))))))).....)))...... -15.038848877 | 44 .(((.((.(.(((.(((((((((.((.((((.....)))).)))))))(((((((...........))))))).)))).)))).))))) (((((...((((((............))...))))...))......(((((((((...........))))))))).....)))...... -15.038848877 |
| 46 >SNORD118 revised x Kt-CD-box.UGU | 45 >SNORD118 revised x Kt-T-box.bsu |
| 46 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 47 >SNORD118 revised x Kt-23.tth | |
| 48 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 49 >SNORD118 revised x Kt-46.eco | |
| 50 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 51 >SNORD118 revised x Kt-c-di-GMP-II.cac | |
| 52 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 53 >SNORD118 revised x Kt-11 (T. thermophilus) | |
| 54 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 55 >SNORD118 revised x Kt-CD-box.AAU | |
| 47 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 56 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 48 >SNORD118 revised x Kt-L30e.sce | 57 >SNORD118 revised x Kt-L30e.sce |
| 49 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 58 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 50 >SNORD118 revised x Kt-SAM-ribo.tte | 59 >SNORD118 revised x Kt-7 (T. thermophilus) |
| 51 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 60 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 52 >SNORD118 revised x Kt-T-box.bsu | 61 >SNORD118 revised x Kt-42.hma |
| 53 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 62 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 54 >SNORD118 revised x Kt-c-di-GMP-II.cac | 63 >SNORD118 revised x Kt-U4a.hsa |
| 55 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 64 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 56 >SNORD118 revised x Kt-G2nA-SAM-riboswitch (T. tengcongensi) | 65 >SNORD118 revised x Kt-G2nA-SAMribo.bsu |
| 57 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | 66 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |
| 67 >SNORD118 revised x Kt-CD-box.GAU | |
| 68 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 69 .(((.((.(.(((.(((((((((.((.((((.....)))).)))))))(((((((...........))))))).)))).)))).))))) (((.(((...(((((......))))))((((.....))))...)).(((((((((...........))))))))).....)))...... -8.30844116211 | |
| 70 >SNORD118 revised x Kt-11.eco | |
| 71 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 72 >SNORD118 revised x Kt-46.hma | |
| 73 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC | |
| 74 >SNORD118 revised x Kt-CD-box.AGU | |
| 75 AGAACAUGAUGAUUGGAGAUGCAUGAAACGUGAUUAACGUCUCUGCGUAAUCAGGACUUGCAACACCCUGAUUGCUCCUGUCUGAUUUC |