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diff test-data/SNORD48-revised.scan-for-segments.txt @ 6:4d16cf9414cf draft default tip

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/segmentation_fold commit 3a3c1d069e0a079d8ea7c0b4ac856ef24141b1aa
author erasmus-medical-center
date Fri, 24 Feb 2017 04:18:22 -0500
parents 63df1e23f4ff
children
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--- a/test-data/SNORD48-revised.scan-for-segments.txt	Wed Aug 03 04:54:40 2016 -0400
+++ b/test-data/SNORD48-revised.scan-for-segments.txt	Fri Feb 24 04:18:22 2017 -0500
@@ -1,56 +1,74 @@
+>SNORD48 revised (2 extra bases on 5' end) x Kt-42.dra
+GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
+>SNORD48 revised (2 extra bases on 5' end) x Kt-42.eco
+GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
+>SNORD48 revised (2 extra bases on 5' end) x Loop-E-Motif.bac
+GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
+>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.UAU
+GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
+>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.UGU
+GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
+>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.CAU
+GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
+>SNORD48 revised (2 extra bases on 5' end) x Kt-42.tth
+GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
+>SNORD48 revised (2 extra bases on 5' end) x Kt-G2nA-SAM-riboswitch (T. tengcongensi)
+GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 G2nA SAM riboswitch (H. marismortui)
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-7 (T. thermophilus)
+>SNORD48 revised (2 extra bases on 5' end) x Kt-15.hma
+GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
+>SNORD48 revised (2 extra bases on 5' end) x Kt-U4b.hsa
+GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
+>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.GGU
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 (E. coli)
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
 >SNORD48 revised (2 extra bases on 5' end) x Kt-7 (D. radiodurans)
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-11 (T. thermophilus)
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-11.eco
+>SNORD48 revised (2 extra bases on 5' end) x Kt-58.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-15.hma
+>SNORD48 revised (2 extra bases on 5' end) x Kt-46.tth
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-23.tth
+>SNORD48 revised (2 extra bases on 5' end) x Kt-SAM-ribo.tte
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
 >SNORD48 revised (2 extra bases on 5' end) x Kt-23.eco
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
 >SNORD48 revised (2 extra bases on 5' end) x Kt-38.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-42.hma
+>SNORD48 revised (2 extra bases on 5' end) x Kt-46.dra
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-42.tth
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-42.dra
+>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.CGU
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-42.eco
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-46.hma
+>SNORD48 revised (2 extra bases on 5' end) x Kt-T-box.bsu
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-46.tth
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-46.dra
+>SNORD48 revised (2 extra bases on 5' end) x Kt-23.tth
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
 >SNORD48 revised (2 extra bases on 5' end) x Kt-46.eco
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-58.hma
+>SNORD48 revised (2 extra bases on 5' end) x Kt-c-di-GMP-II.cac
+GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
+>SNORD48 revised (2 extra bases on 5' end) x Kt-11 (T. thermophilus)
+GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
+>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.AAU
+GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
+>SNORD48 revised (2 extra bases on 5' end) x Kt-L30e.sce
+GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
+>SNORD48 revised (2 extra bases on 5' end) x Kt-7 (T. thermophilus)
+GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
+>SNORD48 revised (2 extra bases on 5' end) x Kt-42.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
 >SNORD48 revised (2 extra bases on 5' end) x Kt-U4a.hsa
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-U4b.hsa
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.CGU
+>SNORD48 revised (2 extra bases on 5' end) x Kt-G2nA-SAMribo.bsu
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.UGU
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-L30e.sce
+>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.GAU
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-SAM-ribo.tte
-GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-T-box.bsu
+((((((.((.((((((((((.....)))).).).)))).((((...))))...)).))))))....	(((((...(((((((...))).....))))).....(((((............)))))))))....	-10.9268188477
+>SNORD48 revised (2 extra bases on 5' end) x Kt-11.eco
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-c-di-GMP-II.cac
+>SNORD48 revised (2 extra bases on 5' end) x Kt-46.hma
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
->SNORD48 revised (2 extra bases on 5' end) x Kt-G2nA-SAM-riboswitch (T. tengcongensi)
+>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.AGU
 GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
+((((((.((.((((((((((.....)))).).).)))).((((...))))...)).))))))....	((...(((((..((..((((.....)))).))((((.((((((...))))..)).)))))))))))	-1.84698486328