Mercurial > repos > yhoogstrate > segmentation_fold
diff utils_add-read-counts.xml @ 6:4d16cf9414cf draft default tip
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/segmentation_fold commit 3a3c1d069e0a079d8ea7c0b4ac856ef24141b1aa
| author | erasmus-medical-center |
|---|---|
| date | Fri, 24 Feb 2017 04:18:22 -0500 |
| parents | b7cf9b172cfe |
| children |
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--- a/utils_add-read-counts.xml Wed Aug 03 04:54:40 2016 -0400 +++ b/utils_add-read-counts.xml Fri Feb 24 04:18:22 2017 -0500 @@ -5,18 +5,10 @@ <import>macros.xml</import> </macros> - <requirements> - <requirement type="package" version="2.7.10">python</requirement> - <requirement type="package" version="1.9">numpy</requirement> - <requirement type="package" version="0.8.2.1">pysam</requirement> - <requirement type="package" version="0.6.1">htseq</requirement> - <requirement type="package" version="2.1.0">segmentation-fold-utils</requirement> - </requirements> - <expand macro="stdio" /> + <expand macro="requirements" /> + <expand macro="version_command" /> - <version_command>@VERSION_COMMAND_UTILS@</version_command> - - <command><![CDATA[ + <command detect_errors="aggressive"><![CDATA[ ln -f -s '${bam_input_file.metadata.bam_index}' '${bam_input_file}.bai' && segmentation-fold-utils @@ -78,4 +70,4 @@ ]]></help> <expand macro="citations" /> -</tool> \ No newline at end of file +</tool>