diff utils_fix-fasta-headers.xml @ 6:4d16cf9414cf draft default tip

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/segmentation_fold commit 3a3c1d069e0a079d8ea7c0b4ac856ef24141b1aa

--- a/utils_fix-fasta-headers.xml	Wed Aug 03 04:54:40 2016 -0400
+++ b/utils_fix-fasta-headers.xml	Fri Feb 24 04:18:22 2017 -0500
@@ -5,19 +5,10 @@
         <import>macros.xml</import>
     </macros>
     
-    <requirements>
-        <requirement type="package" version="2.7.10">python</requirement>
-        <requirement type="package" version="1.9">numpy</requirement>
-        <requirement type="package" version="0.8.2.1">pysam</requirement>
-        <requirement type="package" version="0.6.1">htseq</requirement>
-        <requirement type="package" version="2.1.0">segmentation-fold-utils</requirement>
-    </requirements>
+    <expand macro="requirements" />
+    <expand macro="version_command" />
     
-    <expand macro="stdio" />
-
-    <version_command>@VERSION_COMMAND_UTILS@</version_command>
-    
-    <command><![CDATA[
+    <command detect_errors="aggressive"><![CDATA[
         segmentation-fold-utils
             fix-fasta-headers
                 '${fasta_input}'
@@ -28,8 +19,8 @@
         <param name="fasta_input"
                type="data"
                format="fasta"
-               argument="-f"
-               label="Fasta file with RNA-sequece" />
+               label="Fasta file with RNA-sequece"
+               argument="-f" />
     </inputs>
 
     <outputs>
@@ -40,12 +31,12 @@
 
     <tests>
         <test>
-            <param name="fasta_input" value="test_22.fa" format="fasta" />
+            <param name="fasta_input" value="test_22.fa" ftype="fasta" />
             
             <output name="fasta_output" file="test_22.fixed.fa" />
         </test>
         <test>
-            <param name="fasta_input" value="test_23.fa" format="fasta" />
+            <param name="fasta_input" value="test_23.fa" ftype="fasta" />
             
             <output name="fasta_output" file="test_23.fixed.fa" />
         </test>