Mercurial > repos > yhoogstrate > segmentation_fold
diff macros.xml @ 4:63df1e23f4ff draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 00690c63c51a7f7563f2428c313d7fa75f2657e5-dirty
| author | yhoogstrate |
|---|---|
| date | Thu, 28 Jul 2016 10:25:37 -0400 |
| parents | |
| children | b7cf9b172cfe |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Thu Jul 28 10:25:37 2016 -0400 @@ -0,0 +1,44 @@ +<macros> + <token name="@VERSION@">smf-v1.6-5_utils-v2.0.1</token> + + <xml name="stdio"> + <stdio> + <exit_code range="1:" /> + <exit_code range=":-1" /> + </stdio> + </xml> + + <token name="@VERSION_COMMAND_SMF@">segmentation-fold --version | head -n 2 | tail -n 1 | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//'</token> + <token name="@VERSION_COMMAND_UTILS@">segmentation-fold-utils --version</token> + + + <token name="@REQUIREMENTS_UTILS@"><![CDATA[ + <requirement type="package" version="2.7.10">python</requirement> + <requirement type="package" version="1.9">numpy</requirement> + <requirement type="package" version="0.8.2.1">pysam</requirement> + <requirement type="package" version="0.6.1">htseq</requirement> + <requirement type="package" version="2.0.1">segmentation-fold-utils</requirement> + ]]></token> + + <token name="@REQUIREMENTS_SMF@"><![CDATA[ + <requirement type="package" version="1.6.5">segmentation-fold</requirement> + ]]></token> + + + <xml name="citations"> + <citations> + <citation type="bibtex"> + @mastersthesis{mastersthesis, + author = {Youri Hoogstrate}, + title = {An algorithm for predicting RNA 2D structures including K-turns}, + school = {University of Technology Delft, Leiden University}, + year = 2012, + address = {}, + month = 11, + note = {Research assignment for Master Computer-science}, + url = { https://yh-kt-fold.googlecode.com/files/Report.pdf } + } + </citation> + </citations> + </xml> +</macros>