Mercurial > repos > yhoogstrate > segmentation_fold

view test-data/SNORD48-revised.scan-for-segments.txt @ 6:4d16cf9414cf draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/segmentation_fold commit 3a3c1d069e0a079d8ea7c0b4ac856ef24141b1aa
author erasmus-medical-center
date Fri, 24 Feb 2017 04:18:22 -0500
parents 63df1e23f4ff
children
line wrap: on
line source

>SNORD48 revised (2 extra bases on 5' end) x Kt-42.dra
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-42.eco
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Loop-E-Motif.bac
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.UAU
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.UGU
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.CAU
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-42.tth
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-G2nA-SAM-riboswitch (T. tengcongensi)
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-7 G2nA SAM riboswitch (H. marismortui)
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-15.hma
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-U4b.hsa
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.GGU
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-7 (E. coli)
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-7 (D. radiodurans)
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-58.hma
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-46.tth
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-SAM-ribo.tte
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-23.eco
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-38.hma
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-46.dra
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.CGU
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-T-box.bsu
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-23.tth
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-46.eco
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-c-di-GMP-II.cac
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-11 (T. thermophilus)
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.AAU
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-L30e.sce
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-7 (T. thermophilus)
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-42.hma
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-U4a.hsa
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-G2nA-SAMribo.bsu
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.GAU
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
((((((.((.((((((((((.....)))).).).)))).((((...))))...)).))))))....	(((((...(((((((...))).....))))).....(((((............)))))))))....	-10.9268188477
>SNORD48 revised (2 extra bases on 5' end) x Kt-11.eco
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-46.hma
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
>SNORD48 revised (2 extra bases on 5' end) x Kt-CD-box.AGU
GGAGUGAUGAUGACCCCAGGUAACUCUUGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC
((((((.((.((((((((((.....)))).).).)))).((((...))))...)).))))))....	((...(((((..((..((((.....)))).))((((.((((((...))))..)).)))))))))))	-1.84698486328