view macros.xml @ 4:63df1e23f4ff draft

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit 00690c63c51a7f7563f2428c313d7fa75f2657e5-dirty

<macros>
    <token name="@VERSION@">smf-v1.6-5_utils-v2.0.1</token>

    <xml name="stdio">
        <stdio>
            <exit_code range="1:" />
            <exit_code range=":-1" />
        </stdio>
    </xml>

    <token name="@VERSION_COMMAND_SMF@">segmentation-fold --version | head -n 2 | tail -n 1 | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//'</token>
    <token name="@VERSION_COMMAND_UTILS@">segmentation-fold-utils --version</token>


    <token name="@REQUIREMENTS_UTILS@"><![CDATA[
        <requirement type="package" version="2.7.10">python</requirement>
        <requirement type="package" version="1.9">numpy</requirement>
        <requirement type="package" version="0.8.2.1">pysam</requirement>
        <requirement type="package" version="0.6.1">htseq</requirement>
        <requirement type="package" version="2.0.1">segmentation-fold-utils</requirement>
    ]]></token>

    <token name="@REQUIREMENTS_SMF@"><![CDATA[
        <requirement type="package" version="1.6.5">segmentation-fold</requirement>
    ]]></token>


    <xml name="citations">
        <citations>
            <citation type="bibtex">
               @mastersthesis{mastersthesis,
                  author       = {Youri Hoogstrate}, 
                  title        = {An algorithm for predicting RNA 2D structures including K-turns},
                  school       = {University of Technology Delft, Leiden University},
                  year         = 2012,
                  address      = {},
                  month        = 11,
                  note         = {Research assignment for Master Computer-science},
                  url          = { https://yh-kt-fold.googlecode.com/files/Report.pdf }
                }
            </citation>
        </citations>
    </xml>
</macros>