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comparison test-data/example.vcf @ 1:9a39c4105901 draft default tip

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/galaxy-tool-shed-tools commit bd543e68c1af82bcd6a04f0ae3d1180e8887e122
author erasmus-medical-center
date Wed, 15 Feb 2017 16:16:01 -0500
parents 0c5cc5763091
children
comparison
equal deleted inserted replaced
0:0c5cc5763091 1:9a39c4105901
20 ##FORMAT=<ID=RDF,Number=1,Type=Integer,Description="Depth of reference-supporting bases on forward strand (reads1plus)"> 20 ##FORMAT=<ID=RDF,Number=1,Type=Integer,Description="Depth of reference-supporting bases on forward strand (reads1plus)">
21 ##FORMAT=<ID=RDR,Number=1,Type=Integer,Description="Depth of reference-supporting bases on reverse strand (reads1minus)"> 21 ##FORMAT=<ID=RDR,Number=1,Type=Integer,Description="Depth of reference-supporting bases on reverse strand (reads1minus)">
22 ##FORMAT=<ID=ADF,Number=1,Type=Integer,Description="Depth of variant-supporting bases on forward strand (reads2plus)"> 22 ##FORMAT=<ID=ADF,Number=1,Type=Integer,Description="Depth of variant-supporting bases on forward strand (reads2plus)">
23 ##FORMAT=<ID=ADR,Number=1,Type=Integer,Description="Depth of variant-supporting bases on reverse strand (reads2minus)"> 23 ##FORMAT=<ID=ADR,Number=1,Type=Integer,Description="Depth of variant-supporting bases on reverse strand (reads2minus)">
24 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Sample1 24 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Sample1
25 chr1 24 . C G . PASS ADP=41;WT=0;HET=0;HOM=1;NC=0 GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:236:41:41:0:41:100%:2.3541E-24:0:84:0:0:22:19 25 chr1 24 . C G . PASS ADP=50;WT=0;HET=0;HOM=1;NC=0 GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:255:50:50:0:50:100%:9.9117E-30:0:93:0:0:27:23
26 chr1 84 . G A . PASS ADP=59;WT=0;HET=0;HOM=1;NC=0 GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:255:59:59:0:59:100%:4.1056E-35:0:83:0:0:33:26 26 chr1 84 . G A . PASS ADP=70;WT=0;HET=0;HOM=1;NC=0 GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:255:70:70:0:70:100%:1.0659E-41:0:93:0:0:38:32
27 chr1 146 . T C . PASS ADP=81;WT=0;HET=0;HOM=1;NC=0 GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:255:81:81:0:81:100%:2.7329E-48:0:86:0:0:49:32 27 chr1 146 . T C . PASS ADP=85;WT=0;HET=0;HOM=1;NC=0 GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:255:85:85:0:85:100%:1.0935E-50:0:93:0:0:52:33
28 chr1 206 . A G . PASS ADP=79;WT=0;HET=0;HOM=1;NC=0 GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:255:79:79:0:79:100%:4.3185E-47:0:86:0:0:48:31 28 chr1 206 . A G . PASS ADP=91;WT=0;HET=0;HOM=1;NC=0 GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:255:91:91:0:91:100%:2.7621E-54:0:93:0:0:51:40
29 chr1 495 . T G . PASS ADP=65;WT=0;HET=0;HOM=1;NC=0 GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:255:65:65:0:65:100%:1.0519E-38:0:89:0:0:31:34 29 chr1 495 . T G . PASS ADP=75;WT=0;HET=0;HOM=1;NC=0 GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:255:75:75:0:75:100%:1.0773E-44:0:93:0:0:37:38
30 chr1 496 . A C . PASS ADP=64;WT=0;HET=0;HOM=1;NC=0 GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:255:64:64:0:64:100%:4.1752E-38:0:89:0:0:31:33 30 chr1 496 . A C . PASS ADP=76;WT=0;HET=0;HOM=1;NC=0 GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:255:76:76:0:76:100%:2.711E-45:0:93:0:0:38:38
31 chr1 497 . G C . PASS ADP=63;WT=0;HET=0;HOM=1;NC=0 GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:255:63:63:0:63:100%:1.657E-37:0:89:0:0:30:33 31 chr1 497 . G C . PASS ADP=77;WT=0;HET=0;HOM=1;NC=0 GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR 1/1:255:77:77:0:77:100%:6.8219E-46:0:93:0:0:38:39