annotate xlsx2tab.R @ 14:0e1b2a65ffdc draft

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author ylebras
date Wed, 05 Dec 2018 15:48:23 -0500
parents 6faa8b922ac4
children ca89facf5125
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1 #!/usr/bin/env Rscript
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2 #Read Xlsx sheets - return tabular
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3 library(readxl)
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5 args = commandArgs(trailingOnly=TRUE)
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7 #nfile.copy(args[1],newname, overwrite=TRUE)
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8 #sheet<-read_excel(newname,sheet=args[2])
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9 sheet<-read_excel(args[1],sheet=args[2])
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10 write.table(sheet,"out.tabular",sep="\t",row.names=FALSE)
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12 }
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