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1 <tool id="xls2tab_R" name="XLS sheet to Tabular" version="0.1">
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2 <requirements>
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3 <requirement type="package" version="1.1.0">r-readxl</requirement>
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4 </requirements>
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5 <command detect_errors="exit_code"><![CDATA[
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6 Rscript '$__tool_directory__/xls2tab.R' '$input1' '$sheet' '$output' ]]>
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7 </command>
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8 <inputs>
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9 <param format="excel.xls,xlsx" name="input1" type="data" label="XLS/XLSX file"/>
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10 <param name="sheet" type="text" label="Excel sheet name" value="biodiv_data">
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11 <sanitizer sanitize="False"/>
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12 </param>
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13
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14 </inputs>
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15
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16 <outputs>
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17 <data format="tabular" name="output" from_work_dir="out.tabular" />
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18 </outputs>
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19
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20 <tests>
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21 <test>
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22 <param name="input1" value="example_xlsx.xlsx"/>
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23 <param name="sheet" value="data"/>
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24 <output name="output" file="out.tabular"/>
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25 </test>
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26 </tests>
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27
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28 <help>
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29 **What it does**
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30
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31 Extract a sheet from XLS/XLSX file to a tabular file.
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32
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33
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34 ------
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35
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36 **Example**
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37
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38 Input XLS/XLSX with a sheet named 'données in situ'
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39
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40 Output tabular
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41
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42
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43 ------
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44
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45 **Arguments**
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46
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47 Input: xls/xlsx file.
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48 Excel sheet name: données in situ
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49
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50
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51
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52
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53 </help>
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54 </tool>
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