Mercurial > repos > ylebras > xls2tabular

comparison xlsx2tab.xml @ 3:f5bc9bda73b7 draft

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author ylebras
date Tue, 04 Dec 2018 19:53:44 -0500
parents d4462dd190fe
children 5251f7e929a6
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2:d4462dd190fe 3:f5bc9bda73b7
2 <requirements> 2 <requirements>
3 <requirement type="package" version="3.2.1">R</requirement> 3 <requirement type="package" version="3.2.1">R</requirement>
4 <requirement type="package" version="1.1.0">r-readxl</requirement> 4 <requirement type="package" version="1.1.0">r-readxl</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 cp '$input1' '$input1'.xlsx 7 cp '$input1' input.xlsx &&
8 Rscript '$__tool_directory__/xlsx2tab.R' '$input1' '$sheet' '$output' ]]> 8 Rscript '$__tool_directory__/xlsx2tab.R' input.xlsx '$sheet' '$output' ]]>
9 </command> 9 </command>
10 <inputs> 10 <inputs>
11 <param format="xlsx" name="input1" type="data" label="XLSX file"/> 11 <param format="xlsx" name="input1" type="data" label="XLSX file"/>
12 <param name="sheet" type="text" label="Excel sheet name" value="biodiv_data"> 12 <param name="sheet" type="text" label="Excel sheet name" value="biodiv_data">
13 <sanitizer sanitize="False"/> 13 <sanitizer sanitize="False"/>