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author ylebras
date Thu, 06 Dec 2018 12:34:20 -0500
parents 6877e6cd1d02
children f815b52e9bb6
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<tool id="xls2tab_R" name="XLS sheet to Tabular" version="0.1">
    <requirements>
        <requirement type="package" version="3.2.1">R</requirement>
		<requirement type="package" version="1.1.0">r-readxl</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        Rscript '$__tool_directory__/xls2tab.r' '$input1' '$sheet' '$output' ]]>
    </command>
    <inputs>
        <param format="excel.xls,xlsx" name="input1" type="data" label="XLS/XLSX file"/>
        <param name="sheet" type="text" label="Excel sheet name" value="biodiv_data">
            <sanitizer sanitize="False"/>
        </param>

    </inputs>

    <outputs>
        <data format="tabular" name="output" from_work_dir="out.tabular" />
    </outputs>
    
    <tests>
        <test>
            <param name="input1" value="example_xlsx.xlsx"/>
            <param name="sheet" value=","/>
            <output name="output" file="out.tabular"/>
        </test>
    </tests>

    <help>
**What it does**

Extract a sheet from XLS/XLSX file to a tabular file.


------

**Example**

Input XLS/XLSX with a sheet named 'données in situ'

Output tabular


------

**Arguments**

Input: xls/xlsx file.
Excel sheet name: données in situ




    </help>
</tool>