Mercurial > repos > ynewton > extract_tumor_vs_normal_tcga_ids
comparison get_normal_vs_tumor_sample_ids.xml @ 3:28d795d45ca2 draft
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author | ynewton |
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date | Thu, 17 Jan 2013 20:22:07 -0500 |
parents | 82e5ee13fe5a |
children | 1728895db87e |
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2:82e5ee13fe5a | 3:28d795d45ca2 |
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1 <tool id="extract_tumor_vs_normal_ID_lists" name="Extract tumor vs. normal TCGA IDs" version="1.0.0"> | 1 <tool id="extract_tumor_vs_normal_ID_lists" name="Extract_tumor_vs_normal_TCGA_IDs" version="1.0.0"> |
2 <description>Extract normal vs. tumor IDs for TCGA samples</description> | 2 <description>Extract normal vs. tumor IDs for TCGA samples</description> |
3 <command interpreter="python">get_normal_vs_tumor_sample_ids.py $tableData $outfile1 $outfile2 | 3 <command interpreter="python">get_normal_vs_tumor_sample_ids.py --in_matrix $tableData --out_normals $outfile1 --out_tumor $outfile2 |
4 </command> | 4 </command> |
5 <inputs> | 5 <inputs> |
6 <param name="tableData" format="tabular" type="data" label="Input data"/> | 6 <param name="tableData" format="tabular" type="data" label="Input data"/> |
7 </inputs> | 7 </inputs> |
8 <outputs> | 8 <outputs> |