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1 # Makefile variables useful for third-party code using htslib's public API.
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2 #
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3 # Copyright (C) 2013-2014 Genome Research Ltd.
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4 #
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5 # Author: John Marshall <jm18@sanger.ac.uk>
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6 #
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7 # Permission is hereby granted, free of charge, to any person obtaining a copy
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8 # of this software and associated documentation files (the "Software"), to deal
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9 # in the Software without restriction, including without limitation the rights
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10 # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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11 # copies of the Software, and to permit persons to whom the Software is
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12 # furnished to do so, subject to the following conditions:
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13 #
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14 # The above copyright notice and this permission notice shall be included in
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15 # all copies or substantial portions of the Software.
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16 #
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17 # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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18 # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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19 # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
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20 # THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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21 # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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22 # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
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23 # DEALINGS IN THE SOFTWARE.
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24
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25 # These variables can be used to express dependencies on htslib headers.
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26 # See htslib.mk for details.
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27
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28 htslib_bgzf_h = $(HTSPREFIX)htslib/bgzf.h
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29 htslib_faidx_h = $(HTSPREFIX)htslib/faidx.h
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30 htslib_hfile_h = $(HTSPREFIX)htslib/hfile.h $(htslib_hts_defs_h)
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31 htslib_hts_h = $(HTSPREFIX)htslib/hts.h
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32 htslib_hts_defs_h = $(HTSPREFIX)htslib/hts_defs.h
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33 htslib_regidx_h = $(HTSPREFIX)htslib/regidx.h
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34 htslib_sam_h = $(HTSPREFIX)htslib/sam.h $(htslib_hts_h)
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35 htslib_synced_bcf_reader_h = $(HTSPREFIX)htslib/synced_bcf_reader.h $(htslib_hts_h) $(htslib_vcf_h) $(htslib_tbx_h)
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36 htslib_tbx_h = $(HTSPREFIX)htslib/tbx.h $(htslib_hts_h)
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37 htslib_vcf_h = $(HTSPREFIX)htslib/vcf.h $(htslib_hts_h) $(HTSPREFIX)htslib/kstring.h
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38 htslib_vcf_sweep_h = $(HTSPREFIX)htslib/vcf_sweep.h $(htslib_hts_h) $(htslib_vcf_h)
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39 htslib_vcfutils_h = $(HTSPREFIX)htslib/vcfutils.h $(htslib_vcf_h)
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