annotate ezBAMQC/src/htslib/cram/misc.h @ 4:50a9d8992e65

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author cshl-bsr
date Tue, 29 Mar 2016 15:33:36 -0400
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1 /*
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2 Copyright (c) 1994-1997, 2001-2002 MEDICAL RESEARCH COUNCIL
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3 All rights reserved
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4
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5 Redistribution and use in source and binary forms, with or without
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6 modification, are permitted provided that the following conditions are met:
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7
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8 1 Redistributions of source code must retain the above copyright notice,
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9 this list of conditions and the following disclaimer.
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10
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11 2 Redistributions in binary form must reproduce the above copyright notice,
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12 this list of conditions and the following disclaimer in the documentation
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13 and/or other materials provided with the distribution.
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14
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15 3 Neither the name of the MEDICAL RESEARCH COUNCIL, THE LABORATORY OF
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16 MOLECULAR BIOLOGY nor the names of its contributors may be used to endorse or
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17 promote products derived from this software without specific prior written
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18 permission.
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19
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20 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
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21 ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
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22 WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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23 DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
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24 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
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25 (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
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26 LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
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27 ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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28 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
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29 SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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30 */
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31
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32 /*
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33 Copyright (c) 2003-2013 Genome Research Ltd.
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34
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35 Author: James Bonfield <jkb@sanger.ac.uk>
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36
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37 Redistribution and use in source and binary forms, with or without
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38 modification, are permitted provided that the following conditions are met:
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39
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40 1. Redistributions of source code must retain the above copyright notice,
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41 this list of conditions and the following disclaimer.
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42
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43 2. Redistributions in binary form must reproduce the above copyright notice,
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44 this list of conditions and the following disclaimer in the documentation
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45 and/or other materials provided with the distribution.
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46
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47 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger
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48 Institute nor the names of its contributors may be used to endorse or promote
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49 products derived from this software without specific prior written permission.
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50
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51 THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS IS" AND
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52 ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
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53 WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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54 DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH LTD OR CONTRIBUTORS BE LIABLE
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55 FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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56 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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57 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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58 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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59 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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60 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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61 */
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62
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63 #ifndef _misc_h
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64 #define _misc_h
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65
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66 #include "cram/os.h"
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67
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68 #include <stdio.h>
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69 #include <stdarg.h> /* varargs needed for v*printf() prototypes */
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70 #include <sys/types.h>
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71
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72 #ifdef __cplusplus
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73 extern "C" {
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74 #endif
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75
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76 /*
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77 * This informs gcc that crash() doesn't return, so it doesn't need to
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78 * concern itself that code paths going via crash could mean some variables
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79 * being undefined and then issuing uninitialised variable warnings.
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80 * This particularly affected convert.
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81 */
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82 #ifdef __GNUC__
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83 # define __NORETURN__ __attribute__ ((__noreturn__))
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84 #else
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85 # define __NORETURN__
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86 #endif
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87
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88 /*
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89 * Used for printf style argument checking. We can request a function such
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90 * as vTcl_SetResult does argument checking, avoiding bugs with using
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91 * %d and passing in a 64-bit record.
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92 */
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93 #ifdef __GNUC__
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94 # define __PRINTF_FORMAT__(a,b) __attribute__ ((format (printf, a, b)))
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95 #else
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96 # define __PRINTF_FORMAT__(a,b)
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97 #endif
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98
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99 extern int is_directory(char * fn);
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100 extern int is_file(char * fn);
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101 extern int file_size(char * fn);
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102
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103 #define MIN(A,B) ( ( (A) < (B) ) ? (A) : (B) )
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104 #define MAX(A,B) ( ( (A) > (B) ) ? (A) : (B) )
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105
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106 #ifdef __cplusplus
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107 }
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108 #endif
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109
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110 #endif /*_misc_h*/