Mercurial > repos > youngkim > ezbamqc
diff ezBAMQC/test-data/output/data/smp2.res.txt @ 0:dfa3745e5fd8
Uploaded
| author | youngkim |
|---|---|
| date | Thu, 24 Mar 2016 17:12:52 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ezBAMQC/test-data/output/data/smp2.res.txt Thu Mar 24 17:12:52 2016 -0400 @@ -0,0 +1,49 @@ +filename /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.res.txt +is_pairEnd 0 +clipping_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.clipping_profile.png +mapq_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.mapq_profile.png +mapq_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.mapq_profile.xls +read_cov_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.geneBodyCoverage.png +trans_cov_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.TransCoverage.png +insert_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.inner_distance_plot.png +insert_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.inner_distance_freq.txt +read_dist_plot_file1 /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.read_distr.png +read_dist_plot_file2 /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.read_distr_pie.png +readLen_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.readlen_profile.png +geneCount_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.geneAbundance.txt +seqDeDup_percent 0.000000 +posDeDup_percent 0.000000 +no_clipping 0 +no_rRNA 0 +total_reads 80603 +uniq_mapped_reads 69389 +multi_mapped_reads 11214 +unmapped_reads 0 +low_qual 0 +low_qual_read1 0 +low_qual_read2 0 +pcr_dup 0 +rRNA_read 5939 +cds_read 22143 +utr5_read 1293 +utr3_read 15499 +intron_read 7798 +itgup1k_read 156 +itgdn1k_read 511 +itg_read 21398 +unmapped_read1 0 +unmapped_read2 0 +mapped_read1 0 +mapped_read2 0 +forward_read 34065 +reverse_read 35324 +paired_reads 0 +mapped_plus_minus 0 +mapped_plus_plus 0 +mapped_minus_plus 0 +mapped_minus_minus 0 +ins_read 0 +del_read 0 +noSplice 56765 +splice 12624 +paired_diff_chrom 0