view ezBAMQC/src/htslib/test/fieldarith.sam @ 17:161866cee2a2

wrapper rename

@SQ	SN:one	LN:1000
@SQ	SN:two	LN:500
@CO	For each SAM record that has each listed aux field, performs these tests:
@CO	XQ is the expected result for bam_cigar2qlen()
@CO	XR is the expected result for bam_cigar2rlen()
@CO	XE is the expected result for bam_endpos()
@CO	(Note that these are all zero-based, while POS is one-based in SAM)
r1	0	one	50	20	8M	*	0	0	ATGCATGC	qqqqqqqq	XQ:i:8	XR:i:8	XE:i:57
r2	0	one	100	20	50M	*	0	0	ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCAT	qqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqq	XQ:i:50	XR:i:50	XE:i:149
unmapped	5	two	200	0	*	two	200	0	ATGCATGC	qqqqqqqq	XQ:i:0	XR:i:0	XE:i:200
hascigar	5	two	200	0	6M2S	two	200	0	ATGCATGC	qqqqqqqq	XQ:i:8	XR:i:6	XE:i:200
s1	0	one	300	20	2M	*	0	0	AT	qq	XQ:i:2	XR:i:2	XE:i:301
su1	4	*	0	0	*	*	0	0	AT	qq	XQ:i:0	XR:i:0	XE:i:0
su2	5	two	400	0	*	two	400	0	AT	qq	XQ:i:0	XR:i:0	XE:i:400
su3	4	one	500	0	2M	*	0	0	AT	qq	XQ:i:2	XR:i:2	XE:i:500