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view ezBAMQC/src/htslib/cram/zfio.h @ 20:9de3bbec2479 draft default tip
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author | youngkim |
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date | Thu, 31 Mar 2016 10:10:37 -0400 |
parents | dfa3745e5fd8 |
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/* Copyright (c) 2009-2013 Genome Research Ltd. Author: James Bonfield <jkb@sanger.ac.uk> Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger Institute nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */ #ifndef _ZFIO_H_ #define _ZFIO_H_ #include <stdio.h> #include <zlib.h> /* * Either a gzFile or a FILE. */ typedef struct { FILE *fp; gzFile gz; } zfp; off_t zftello(zfp *zf); int zfseeko(zfp *zf, off_t offset, int whence); char *zfgets(char *line, int size, zfp *zf); int zfputs(char *line, zfp *zf); zfp *zfopen(const char *path, const char *mode); int zfclose(zfp *zf); int zfpeek(zfp *zf); int zfeof(zfp *zf); #endif /* _ZFIO_H_ */