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view ezBAMQC/test-data/output/data/smp2.res.txt @ 20:9de3bbec2479 draft default tip

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author youngkim
date Thu, 31 Mar 2016 10:10:37 -0400
parents dfa3745e5fd8
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filename	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.res.txt
is_pairEnd	0
clipping_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.clipping_profile.png
mapq_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.mapq_profile.png
mapq_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.mapq_profile.xls
read_cov_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.geneBodyCoverage.png
trans_cov_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.TransCoverage.png
insert_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.inner_distance_plot.png
insert_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.inner_distance_freq.txt
read_dist_plot_file1	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.read_distr.png
read_dist_plot_file2	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.read_distr_pie.png
readLen_plot_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.readlen_profile.png
geneCount_file	/sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.geneAbundance.txt
seqDeDup_percent	0.000000
posDeDup_percent	0.000000
no_clipping	0
no_rRNA	0
total_reads	80603
uniq_mapped_reads	69389
multi_mapped_reads	11214
unmapped_reads	0
low_qual	0
low_qual_read1	0
low_qual_read2	0
pcr_dup	0
rRNA_read	5939
cds_read	22143
utr5_read	1293
utr3_read	15499
intron_read	7798
itgup1k_read	156
itgdn1k_read	511
itg_read	21398
unmapped_read1	0
unmapped_read2	0
mapped_read1	0
mapped_read2	0
forward_read	34065
reverse_read	35324
paired_reads	0
mapped_plus_minus	0
mapped_plus_plus	0
mapped_minus_plus	0
mapped_minus_minus	0
ins_read	0
del_read	0
noSplice	56765
splice	12624
paired_diff_chrom	0