diff bedExt.xml @ 0:0475e4175855 draft default tip

planemo upload commit 81ece2551cea27cbd0e718ef5b7a2fe8d4abd071-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bedExt.xml	Mon Apr 30 05:25:11 2018 -0400
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+<tool id="bedExt" name="Get the position before the start site">
+  <description>as a potential cross link site that causes truncation</description>
+  <command interpreter="perl">
+	/home/galaxy/tools/CTK/bedExt.pl -n $NeighborRegion -l $LeftExtension -r $RightExtension -v $input $output
+  </command>
+
+  <inputs>
+        <param name="input" type="data" format="bed" label="Input BED file in which CLIP tags with deletions were removed"/>
+        <param name="NeighborRegion" type="text" value="up" label="Get neighbor region relative to up|down|r=100"/>
+        <param name="LeftExtension" type="integer" value="-1" label="Extension on the left, with sign 0"/>
+        <param name="RightExtension" type="integer" value="-1" label="Extension on the right, with sign 0"/>
+  </inputs>
+  
+  <outputs>
+        <data name="output" format="bed" label="Output file in BED format extended around start site as a potential cross link site that causes truncation" />
+  </outputs>
+  <help>
+
+.. class:: infomark
+
+**What this tool does**
+
+This tool will extract sequences specied by a bed file. 
+
+Here it  will take as input files in BED format in which CLIP tags with deletions were removed and output files in BED format extended around start site as a potential cross link site that causes truncation.
+  </help>
+</tool>
+