view fastq2collapse.xml @ 0:0475e4175855 draft default tip

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<tool id="fastq2collapse" name="Collapse exact PCR duplicates">
	<description>in FASTQ</description>
	<command interpreter="perl">
		/home/galaxy/tools/CTK/fastq2collapse.pl -v  $input $output
	</command>
	<inputs>
		<param type="data" format="fastq" name="input" label="Input FASTQ file (.gz file accepted)"/>
	</inputs>

	<outputs>
		<data name="output" format="fastq" label="Collapse exact PCR duplicates on ${on_string}" />
	</outputs>

	<help>

.. class:: infomark

**What this tool does**

This tool will collapse exact duplicate sequences.

It will take as input files in FASTQ format of filtered and trimmed reads and output files in FASTQ format in which exact PCR duplicates have been collapsed.

-----

.. class:: warningmark

For big files (e.g. those from HiSeq), the program is memory intensive, so run one job at a time in this case.



	</help>
</tool>