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1 # Marie-Anges Dillies
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2 # plotDispEstimates
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3 # scatter plots representing dispersion estimates vs mean expression
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4
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5 # input : cds, OUT_plotDispEstimatesName
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6 # output : scatterplot (png)
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7
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8 plotDispEstimates <- function( cds, OUT_plotDispEstimatesName, out = TRUE ){
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9
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10 if (out) png( file=OUT_plotDispEstimatesName )
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11
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12 plot(
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13 rowMeans( counts(cds, normalized=T) ),
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14 fitInfo(cds)$perGeneDispEsts,
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15 pch=".", log="xy",
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16 xlab = "Mean expression strength", ylab = "Dispersion estimate" )
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17
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18 xg <- 10^seq(-.5, 5, length.out=300)
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19 lines( xg, fitInfo(cds)$dispFun(xg), col="red" )
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20
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21 if (out) dev.off()
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22 }
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