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1 # exportComplete
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2 # export complete data and results
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3
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4 # input : counts res, target
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5 # output : complete data and xls file (in text format)
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6
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7 # created Feb 14th, 2012
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8 # modified March 9th, 2012 (order of cond1 and cond2)
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9 # Marie-Anges Dillies
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10
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11 exportComplete <- function( counts, res, target, adjMethod, cond1, cond2, OUT_completeName, out = T ){
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12
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13 complete <- data.frame( res$id, counts, res[,3:ncol(res)] )
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14 colnames(complete) <- c( "id", as.character(target$label), cond2, cond1, "FC", "log2FC", "rawp",
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15 paste("adjp",adjMethod,sep="") )
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16
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17 if (out)
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18 write.table( complete, file=OUT_completeName, sep="\t", row.names=F )
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19 return( complete )
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20 }
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