comparison deseq/differential_expression_analysis_pipeline_for_rnaseq_data-a03838a6eb54/DiffExpAnal/DESeqTools/exportComplete.R @ 10:6e573fd3c41b draft

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author yufei-luo
date Mon, 13 May 2013 10:06:30 -0400
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9:a03838a6eb54 10:6e573fd3c41b
1 # exportComplete
2 # export complete data and results
3
4 # input : counts res, target
5 # output : complete data and xls file (in text format)
6
7 # created Feb 14th, 2012
8 # modified March 9th, 2012 (order of cond1 and cond2)
9 # Marie-Anges Dillies
10
11 exportComplete <- function( counts, res, target, adjMethod, cond1, cond2, OUT_completeName, out = T ){
12
13 complete <- data.frame( res$id, counts, res[,3:ncol(res)] )
14 colnames(complete) <- c( "id", as.character(target$label), cond2, cond1, "FC", "log2FC", "rawp",
15 paste("adjp",adjMethod,sep="") )
16
17 if (out)
18 write.table( complete, file=OUT_completeName, sep="\t", row.names=F )
19 return( complete )
20 }