annotate commons/core/sql/Job.py @ 9:1eb55963fe39

Updated CompareOverlappingSmall*.py
author m-zytnicki
date Thu, 14 Mar 2013 05:23:05 -0400
parents 769e306b7933
children
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1 # Copyright INRA (Institut National de la Recherche Agronomique)
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2 # http://www.inra.fr
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3 # http://urgi.versailles.inra.fr
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4 #
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5 # This software is governed by the CeCILL license under French law and
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6 # abiding by the rules of distribution of free software. You can use,
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7 # modify and/ or redistribute the software under the terms of the CeCILL
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8 # license as circulated by CEA, CNRS and INRIA at the following URL
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9 # "http://www.cecill.info".
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10 #
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11 # As a counterpart to the access to the source code and rights to copy,
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12 # modify and redistribute granted by the license, users are provided only
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13 # with a limited warranty and the software's author, the holder of the
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14 # economic rights, and the successive licensors have only limited
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15 # liability.
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16 #
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17 # In this respect, the user's attention is drawn to the risks associated
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18 # with loading, using, modifying and/or developing or reproducing the
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19 # software by the user in light of its specific status of free software,
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20 # that may mean that it is complicated to manipulate, and that also
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21 # therefore means that it is reserved for developers and experienced
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22 # professionals having in-depth computer knowledge. Users are therefore
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23 # encouraged to load and test the software's suitability as regards their
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24 # requirements in conditions enabling the security of their systems and/or
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25 # data to be ensured and, more generally, to use and operate it in the
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26 # same conditions as regards security.
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27 #
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28 # The fact that you are presently reading this means that you have had
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29 # knowledge of the CeCILL license and that you accept its terms.
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30
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31 ## Job informations to launch a command on a cluster.
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32 #
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33 class Job(object):
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34
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35 ## Constructor
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36 #
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37 # @param jobid the job identifier
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38 # @param jobname the job name
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39 # @param groupid the group identifier to record related job series
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40 # @param queue queue name of the job manager
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41 # @param command command launched
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42 # @param node cluster node name where the execution takes place
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43 # @param launcherFile file name launched as job
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44 # @param lResources resources (memory, time...) but need to conform to SGE/Torque syntax !
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45 #
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46 def __init__(self, jobid=0, jobname="", groupid="", queue="", command="", launcherFile="",\
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47 node="", lResources=["mem_free=1G"], parallelEnvironment="" ):
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48 if str(jobid).isdigit():
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49 self.jobid = int(jobid)
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50 self.jobname = jobname
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51 else:
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52 self.jobname = jobid
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53 self.jobid = 0
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54 self.jobid = jobid
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55 self.groupid = groupid
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56 self.setQueue(queue)
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57 self.command = command
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58 self.launcher = launcherFile
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59 self.node = node
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60 self.lResources = lResources
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61 self.parallelEnvironment = parallelEnvironment
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62
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63 def setQueue(self, queue):
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64 self.queue = ""
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65 if queue != "none":
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66 self.queue = queue
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67
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68 def __eq__(self, o):
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69 if self.jobid == o.jobid and self.jobname == o.jobname\
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70 and self.groupid == o.groupid and self.queue == o.queue and self.command == o.command \
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71 and self.launcher == o.launcher and self.node == o.node and self.lResources == o.lResources \
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72 and self.parallelEnvironment == o.parallelEnvironment:
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73 return True
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74 return False