Mercurial > repos > yufei-luo > s_mart
annotate smart_toolShed/SMART/Java/Python/removeAllTmpTables.py @ 4:1fc014126d55
Uploaded
author | yufei-luo |
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date | Fri, 18 Jan 2013 04:45:50 -0500 |
parents | e0f8dcca02ed |
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rev | line source |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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1 #! /usr/bin/env python |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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2 # |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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3 # Copyright INRA-URGI 2009-2010 |
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4 # |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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5 # This software is governed by the CeCILL license under French law and |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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6 # abiding by the rules of distribution of free software. You can use, |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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7 # modify and/ or redistribute the software under the terms of the CeCILL |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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8 # license as circulated by CEA, CNRS and INRIA at the following URL |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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9 # "http://www.cecill.info". |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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10 # |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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11 # As a counterpart to the access to the source code and rights to copy, |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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12 # modify and redistribute granted by the license, users are provided only |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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13 # with a limited warranty and the software's author, the holder of the |
e0f8dcca02ed
Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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14 # economic rights, and the successive licensors have only limited |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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15 # liability. |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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16 # |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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17 # In this respect, the user's attention is drawn to the risks associated |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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18 # with loading, using, modifying and/or developing or reproducing the |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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19 # software by the user in light of its specific status of free software, |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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20 # that may mean that it is complicated to manipulate, and that also |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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21 # therefore means that it is reserved for developers and experienced |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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22 # professionals having in-depth computer knowledge. Users are therefore |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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23 # encouraged to load and test the software's suitability as regards their |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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24 # requirements in conditions enabling the security of their systems and/or |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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25 # data to be ensured and, more generally, to use and operate it in the |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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26 # same conditions as regards security. |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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27 # |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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28 # The fact that you are presently reading this means that you have had |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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29 # knowledge of the CeCILL license and that you accept its terms. |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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30 # |
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31 """Remove all tmp tables in the MySQL database""" |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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32 |
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33 import os |
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34 import glob |
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35 from optparse import OptionParser |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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36 from SMART.Java.Python.mySql.MySqlConnection import * |
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37 |
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38 |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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39 if __name__ == "__main__": |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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40 |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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41 description = "Remove Tables v1.0.2: Remove tables in the local MySQL database. [Category: Other]" |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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42 |
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43 parser = OptionParser(description = description) |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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44 parser.add_option("-t", "--tmp", dest="tmp", action="store_true", default=False, help="Remove temporary tables only [format: bool] [default: false]") |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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45 parser.add_option("-f", "--files", dest="files", action="store_false", default=True, help="Do not remove temporary files [format: bool] [default: true]") |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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46 (options, args) = parser.parse_args() |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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47 |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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48 print "Removing temporary databases:" |
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49 if options.files: |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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50 for tmpFile in glob.glob("smartdb*"): |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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51 print " removing %s" % (tmpFile) |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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52 os.unlink(tmpFile) |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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53 print "Removing temporary files:" |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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54 if options.files: |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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55 for tmpFile in glob.glob("tmp*.dat"): |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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56 print " removing %s" % (tmpFile) |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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57 os.unlink(tmpFile) |
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58 for tmpFile in glob.glob("tmp*.R"): |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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59 print " removing %s" % (tmpFile) |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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60 os.unlink(tmpFile) |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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61 for tmpFile in glob.glob("tmp*.Rout"): |
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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62 print " removing %s" % (tmpFile) |
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63 os.unlink(tmpFile) |
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64 |