Mercurial > repos > yufei-luo > s_mart

annotate SMART/galaxy/ConvertTranscriptFile_BlastToGff3.xml @ 32:3441fe98a2ba

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Deleted selected files
author m-zytnicki
date Tue, 30 Apr 2013 14:34:10 -0400
parents 769e306b7933
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
6
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
1 <tool id="ConvertTranscriptFile_BlastToGff3" name="Blast (-m 8) -> Gff3">
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
2 <description>Convert Blast (-m 8) File to Gff3 File.</description>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f blast -o $outputFile -g gff3 yes 2>$logFile </command>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
4 <inputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
5 <param name="inputFile" type="data" label="Input File" format="tabular"/>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
6 </inputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
7
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
8 <outputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
9 <data format="gff3" name="outputFile" label="[blast -> gff3] Output File"/>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
10 <data format="txt" name="logFile" label="[blast -> gff3] Log File"/>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
11 </outputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
12
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
13 <help>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
14 </help>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
15 </tool>