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1 <tool id="removeExonLines" name="remove exon lines">
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2 <description>Removes the introns of the transcript files.</description>
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3 <requirements>
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4 <requirement type="set_environment">PYTHONPATH</requirement>
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5 </requirements>
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6 <command interpreter="python"> ../Java/Python/RemoveExons.py -i $inputFile -f gff3 -o $outputFile </command>
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7 <inputs>
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8 <param name="inputFile" format="gff3" type="data" label="Input File"/>
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9 </inputs>
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10
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11 <outputs>
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12 <data format="gff3" name="outputFile" label="[remove introns] output file"/>
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13 </outputs>
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14
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15 <help>
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16 Simply remove the introns of the input file, thus getting the unmatured transcript.
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17 </help>
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18 </tool>
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