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annotate SMART/galaxy/ConvertTranscriptFile_BedToGff3.xml @ 15:440ceca58672

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author m-zytnicki
date Mon, 22 Apr 2013 11:08:07 -0400
parents 769e306b7933
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1 <tool id="ConvertTranscriptFile_BedToGff3" name="Bed -> Gff3">
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2 <description>Convert Bed File to Gff3 File.</description>
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3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f bed -o $outputFile -g gff3 yes 2>$logFile </command>
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4 <inputs>
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5 <param name="inputFile" type="data" label="Input File" format="bed"/>
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6 </inputs>
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7
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8 <outputs>
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9 <data format="gff3" name="outputFile" label="[bed -> gff3] Output File"/>
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10 <data format="txt" name="logFile" label="[bed -> gff3] Log File"/>
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11 </outputs>
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12
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13 <help>
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14 </help>
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15 </tool>