annotate SMART/galaxy/ConvertTranscriptFile_FastqToFasta.xml @ 12:5a054da77808

Updated CompareOverlappingSmallRef.xml
author m-zytnicki
date Thu, 14 Mar 2013 05:37:35 -0400
parents 769e306b7933
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 <tool id="ConvertTranscriptFile_FastqToFasta" name="Fastq -> Fasta">
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2 <description>Convert Fastq File to Fasta File.</description>
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3 <command interpreter="python"> ../Java/Python/fastqToFasta.py -i $inputFile -o $outputFile 2>$logFile </command>
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4 <inputs>
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5 <param name="inputFile" type="data" label="Input File" format="fastq"/>
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6 </inputs>
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7
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8 <outputs>
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9 <data format="fasta" name="outputFile" label="[fastq -> fasta] Output File"/>
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10 <data format="txt" name="logFile" label="[fastq -> fasta] Log File"/>
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11 </outputs>
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13 <help>
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14 </help>
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15 </tool>