Mercurial > repos > yufei-luo > s_mart
annotate smart_toolShed/SMART/Java/FormatsContainer.java @ 2:7c697a8bde9f
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| author | yufei-luo | 
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| date | Thu, 17 Jan 2013 11:02:49 -0500 | 
| parents | e0f8dcca02ed | 
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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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changeset | 1 /** | 
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changeset | 2 * | 
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changeset | 3 * Copyright INRA-URGI 2009-2010 | 
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changeset | 4 * | 
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changeset | 5 * This software is governed by the CeCILL license under French law and | 
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changeset | 6 * abiding by the rules of distribution of free software. You can use, | 
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changeset | 7 * modify and/ or redistribute the software under the terms of the CeCILL | 
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changeset | 8 * license as circulated by CEA, CNRS and INRIA at the following URL | 
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changeset | 9 * "http://www.cecill.info". | 
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changeset | 10 * | 
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changeset | 11 * As a counterpart to the access to the source code and rights to copy, | 
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changeset | 12 * modify and redistribute granted by the license, users are provided only | 
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changeset | 13 * with a limited warranty and the software's author, the holder of the | 
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changeset | 14 * economic rights, and the successive licensors have only limited | 
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changeset | 15 * liability. | 
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changeset | 16 * | 
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changeset | 17 * In this respect, the user's attention is drawn to the risks associated | 
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changeset | 18 * with loading, using, modifying and/or developing or reproducing the | 
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changeset | 19 * software by the user in light of its specific status of free software, | 
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changeset | 20 * that may mean that it is complicated to manipulate, and that also | 
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changeset | 21 * therefore means that it is reserved for developers and experienced | 
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changeset | 22 * professionals having in-depth computer knowledge. Users are therefore | 
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changeset | 23 * encouraged to load and test the software's suitability as regards their | 
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changeset | 24 * requirements in conditions enabling the security of their systems and/or | 
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changeset | 25 * data to be ensured and, more generally, to use and operate it in the | 
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changeset | 26 * same conditions as regards security. | 
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changeset | 27 * | 
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changeset | 28 * The fact that you are presently reading this means that you have had | 
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changeset | 29 * knowledge of the CeCILL license and that you accept its terms. | 
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changeset | 30 * | 
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changeset | 31 */ | 
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changeset | 32 import java.util.*; | 
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changeset | 33 | 
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changeset | 34 public class FormatsContainer { | 
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changeset | 35 | 
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changeset | 36 HashMap < String, FormatType > formatTypes; | 
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changeset | 37 | 
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changeset | 38 | 
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changeset | 39 public FormatsContainer() { | 
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changeset | 40 this.formatTypes = new HashMap < String, FormatType > (); | 
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changeset | 41 } | 
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changeset | 42 | 
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changeset | 43 | 
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changeset | 44 public void addFormat(String type, String format) { | 
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changeset | 45 FormatType formatType; | 
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changeset | 46 if (formatTypes.containsKey(type)) { | 
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changeset | 47 formatType = this.formatTypes.get(type); | 
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changeset | 48 } | 
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changeset | 49 else { | 
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changeset | 50 formatType = new FormatType(type); | 
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changeset | 51 this.formatTypes.put(type, formatType); | 
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changeset | 52 } | 
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changeset | 53 formatType.addFormat(format); | 
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changeset | 54 } | 
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changeset | 55 | 
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changeset | 56 | 
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changeset | 57 public Vector < String > getFormatTypes () { | 
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changeset | 58 Vector < String > v = new Vector < String > (); | 
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changeset | 59 v.addAll(this.formatTypes.keySet()); | 
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changeset | 60 return v; | 
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changeset | 61 } | 
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changeset | 62 | 
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changeset | 63 | 
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changeset | 64 public FormatType getFormats (String type) { | 
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changeset | 65 if (! formatTypes.containsKey(type)) { | 
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changeset | 66 System.out.print("Format type " + type + " is unavailable. Got: "); | 
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changeset | 67 Iterator it = formatTypes.entrySet().iterator(); | 
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changeset | 68 while (it.hasNext()) { | 
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changeset | 69 Map.Entry pairs = (Map.Entry) it.next(); | 
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changeset | 70 System.out.print(pairs.getKey() + " "); | 
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changeset | 71 } | 
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changeset | 72 System.out.println(); | 
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changeset | 73 } | 
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changeset | 74 return formatTypes.get(type); | 
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changeset | 75 } | 
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changeset | 76 | 
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changeset | 77 | 
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changeset | 78 public String getFormatType (String format) { | 
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changeset | 79 for (Iterator it = formatTypes.keySet().iterator(); it.hasNext(); ) { | 
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changeset | 80 Object type = it.next(); | 
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changeset | 81 Object formatType = formatTypes.get(type); | 
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changeset | 82 if (((FormatType) formatType).containsFormat(format)) { | 
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changeset | 83 return (String) type; | 
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changeset | 84 } | 
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changeset | 85 } | 
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changeset | 86 return null; | 
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changeset | 87 } | 
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changeset | 88 } | 
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changeset | 89 | 
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changeset | 90 | 
