annotate SMART/Java/Python/structure/TranscriptListIterator.py @ 62:8c42a6d7ffd4

Added simple test BED file.

#
# Copyright INRA-URGI 2009-2010
# 
# This software is governed by the CeCILL license under French law and
# abiding by the rules of distribution of free software. You can use,
# modify and/ or redistribute the software under the terms of the CeCILL
# license as circulated by CEA, CNRS and INRIA at the following URL
# "http://www.cecill.info".
# 
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# with a limited warranty and the software's author, the holder of the
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class TranscriptListIterator(object):
    """A class that iterates on a list of transcript"""

    def __init__(self, transcriptList, verbosity = 0):
        self.transcriptList = transcriptList
        self.verbosity = verbosity
        self.chromosomes = self.transcriptList.transcripts.keys()
        self.currentChromosome = 0
        self.currentTranscript = -1


    def __iter__(self):
        return self
    
    
    def next(self):
        self.currentTranscript += 1
        while True:
            if self.currentChromosome >= len(self.transcriptList.transcripts):
                raise StopIteration
            elif self.currentTranscript >= len(self.transcriptList.transcripts[self.chromosomes[self.currentChromosome]]):
                self.currentTranscript = 0
                self.currentChromosome += 1
            elif self.transcriptList.transcripts[self.chromosomes[self.currentChromosome]][self.currentTranscript] == None:
                self.currentTranscript += 1
            else:
                return self.transcriptList.transcripts[self.chromosomes[self.currentChromosome]][self.currentTranscript]