comparison SMART/DiffExpAnal/countNumber_parallel.xml @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
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30:5677346472b5 31:0ab839023fe4
1 <tool id="countNumber_parallel" name="countNumber (for DEA)">
2
3 <description>Calculate the number of reads(annotations) overlapping for each transcript.</description>
4 <command interpreter="python"> countNumber_parallel.py -i $inputTxt -o $outputTxt $tar $outputTarFile
5 </command>
6
7 <inputs>
8 <param name="inputTxt" type="data" format="txt" label="Please choose your txt format file (which contains a list of gff3 overlapping results files)."/>
9 <param name="tar" type="boolean" truevalue="-t" falsevalue="" checked="False" label="tar option" help="This option creates a tar file for all out results" />
10 </inputs>
11
12 <outputs>
13 <data format="txt" name="outputTxt" label="countNumber Output"/>
14 <data name="outputTarFile" format="tar">
15 <filter>tar</filter>
16 </data>
17 </outputs>
18
19 </tool>