Mercurial > repos > yufei-luo > s_mart
comparison SMART/bacteriaRegulatoryRegion_Detection/prepareAnnot.xml @ 31:0ab839023fe4
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| author | m-zytnicki |
|---|---|
| date | Tue, 30 Apr 2013 14:33:21 -0400 |
| parents | 94ab73e8a190 |
| children |
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| 30:5677346472b5 | 31:0ab839023fe4 |
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| 1 <tool id="prepareAnnotation" name="prepare annotation file"> | |
| 2 <description>Prepares Annotation file -> clusterizes, filters exon and sorts annotations.</description> | |
| 3 <command interpreter="bash"> prepareAnnot.sh $inputFile $outputFile </command> | |
| 4 <inputs> | |
| 5 <param name="inputFile" type="data" label="Input File" format="gff"/> | |
| 6 </inputs> | |
| 7 | |
| 8 <outputs> | |
| 9 <data format="gff3" name="outputFile" label="[prepareAnnotation] Output File"/> | |
| 10 </outputs> | |
| 11 | |
| 12 <help> | |
| 13 command example: sh prepareAnnot.sh NC_011744r_annot_tmp1.gff NC_011744r_annot_pre1.gff | |
| 14 </help> | |
| 15 </tool> |