Mercurial > repos > yufei-luo > s_mart
comparison SMART/galaxy/removeExonLines.xml @ 31:0ab839023fe4
Uploaded
| author | m-zytnicki |
|---|---|
| date | Tue, 30 Apr 2013 14:33:21 -0400 |
| parents | 94ab73e8a190 |
| children |
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| 30:5677346472b5 | 31:0ab839023fe4 |
|---|---|
| 1 <tool id="removeExonLines" name="remove exon lines"> | 1 <tool id="removeExonLines" name="remove exon lines"> |
| 2 <description>Removes the lines containing Exon.</description> | 2 <description>Removes the lines containing Exon.</description> |
| 3 <requirements> | |
| 4 <requirement type="set_environment">PYTHONPATH</requirement> | |
| 5 </requirements> | |
| 6 <command interpreter="sh"> ../Java/Python/removeExonLines.sh $inputFile > $outputFile </command> | 3 <command interpreter="sh"> ../Java/Python/removeExonLines.sh $inputFile > $outputFile </command> |
| 7 <inputs> | 4 <inputs> |
| 8 <param name="inputFile" type="data" label="Input File" format="gff3"/> | 5 <param name="inputFile" type="data" label="Input File" format="gff3"/> |
| 9 </inputs> | 6 </inputs> |
| 10 | 7 |
| 11 <outputs> | 8 <outputs> |
| 12 <data format="gff3" name="outputFile" label="[remove exon line] output file"/> | 9 <data format="gff3" name="outputFile" label="[removeExonLine] Output File"/> |
| 13 </outputs> | 10 </outputs> |
| 14 | 11 |
| 15 <help> | 12 <help> |
| 16 command example: sh removeExonLines.sh input.gff3 | 13 command example: sh removeExonLines.sh input.gff3 |
| 17 </help> | 14 </help> |