Mercurial > repos > yufei-luo > s_mart
comparison SMART/galaxy/testArgum.xml @ 31:0ab839023fe4
Uploaded
author | m-zytnicki |
---|---|
date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 769e306b7933 |
children |
comparison
equal
deleted
inserted
replaced
30:5677346472b5 | 31:0ab839023fe4 |
---|---|
1 <tool id="test_argument" name="test_argu" version="1.0.0"> | |
2 <description>To test the arguments from shell.</description> | |
3 <command> | |
4 ../testArgu.sh $test_out | |
5 #for $i in $replicate_groups | |
6 #for $j in $i.replicates | |
7 $j.bam_alignment:#slurp | |
8 #end for | |
9 #end for | |
10 >> $Log_File </command> | |
11 <inputs> | |
12 <param format="gff3" name="anno_input_selected" type="data" label="Genome annotation in GFF3 file" help="A tab delimited format for storing sequence features and annotations"/> | |
13 <repeat name="replicate_groups" title="Replicate group" min="2"> | |
14 <repeat name="replicates" title="Replicate"> | |
15 <param format="fastq" name="bam_alignment" type="data" label="BAM alignment file" help="BAM alignment file. Can be generated from SAM files using the SAM Tools."/> | |
16 </repeat> | |
17 </repeat> | |
18 </inputs> | |
19 | |
20 <outputs> | |
21 <data format="txt" name="test_out" label="DESeq result"/> | |
22 <data format="txt" name="Log_File" label="DESeq result"/> | |
23 </outputs> | |
24 </tool> |