Mercurial > repos > yufei-luo > s_mart
comparison commons/pyRepetUnit/hmmer/tests/datas/test_input_nt.fa @ 31:0ab839023fe4
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| author | m-zytnicki |
|---|---|
| date | Tue, 30 Apr 2013 14:33:21 -0400 |
| parents | 94ab73e8a190 |
| children |
comparison
equal
deleted
inserted
replaced
| 30:5677346472b5 | 31:0ab839023fe4 |
|---|---|
| 1 >blumeria_Grouper_28830_3 | |
| 2 TGTGGCTTCTAGTTGATCAGTTTATGATCACAATGATTTCACGTAGGTGTCTCGTGGCTC | |
| 3 CGACTAATCAACAATATAATGCGAGTAGAGCTTGAGACTAATAAAACGTGAATTTNATTC | |
| 4 TATAATACAGGATCGCCAACTTATTTAAATATTCCCCCGCACCACGTGAGCCAATCAACA | |
| 5 GCGCACAATTTGCACGGTCGGGTTTCCATCAATTGGGATCCACAAACTATCCCCCTTCTC | |
| 6 AAAACTAGCTGTCCACAGCTTATTTAAATTACAAGTTAATTAGAAATTTTATTATGGTAT | |
| 7 CACTCAAACTAAATCCTTGCTGAATTTTTGAGTGTCTTTCTATCCTGCTCCAGCATACGG | |
| 8 CGGCTACCATACCATAGACTACGAACTGGGTGTCCTTCACGTACATATGCCGGGAATAGG | |
| 9 TTTGTGCCGTTGTACTTGTTGCCTAATTTGTATCCACCCGGTGATATTAAGGAGTAGGTA | |
| 10 TTATTATTATGACAAGCTGCTACGGCCCATGGCCCGTCATAGTAGGGCTCCATCTTGTGT | |
| 11 CTTCGCTGGCGTACTCGCAGTACCCAGTCTCCGGGGGCGTAAGTACGTATAAGTGCCTTT | |
| 12 TCTTCCTGGAGGTAAGCCCGTATTTTATCCCTAGTTGCTTTCATACTACTAACGTAGGAG | |
| 13 CGTGCTATTGGTGCGGGGTGTTTCCTTCCGAGTTCTTCGGCCCAGAGGCGCTCCTCTGAT | |
| 14 TCTGTGGCTTCACGGGTATATACTGGATAAGAATTTTCCTCCTCCGGGGGCTGAGTGCCG | |
| 15 AAGAGTAAGAAGTAAGGGCTATACCCGCTGGGTGAGACTCTTCGATTGAAATTCATTACC | |
| 16 GCGAGTGAGAGAGCGCCAGCTAGTGTAATTTTAGGAGAATCCAGGAGAACTCTGACCAGT | |
| 17 ATGGCTTTCAGAACGCCATTTGCCTGTTCGACTTTGCCATTTCCTCTTGGCCTAGCTGGT | |
| 18 GTGGTATGGACAACCTGCAGTTGTTGGCTAGCTTGAAATCGTTGTGCTTCTATGCCTCCG | |
| 19 AAGCAGCCAGCATTGTCACTGATAATCTGCTTTGGCTTTCCAAAGTTCTGGATAATATAC | |
| 20 GTGAGCAGAGGCACAGTGTTAGCGAAGTCTGCATTGGGAACTAAGCGGGATTCCAGCCAG | |
| 21 CCTGTTGCGTACTCAATTGCATTGAGCAAGACTTGGGGTCCTACTTGAGTATGATCTATA | |
| 22 CCCCACCGTGTCAGAGGAGGTGCTGGTACTATAGGAGTTAAGCTTCCCAGTAACGGGTCT | |
| 23 GGAGGTTTCATGAGCTGACAGGACTTGCATTTTCGGACAGCTTCGTGAGCCGCGAGGATC | |
| 24 AGTTCGGGGTGCCAAAACCTACGCCCTAATTCCCGCATAGTATTGCCGATTGACGCATGG | |
| 25 CCTTGGCCCTCATGAACATTTACGGCCGTCGATACTAGATCCTCATATTCCAAGATTTCT | |
| 26 AGTAGGGTTGCGGCGCCAGATGGACCAGGTGCATCGCCTACTTGTTGCGACGGGTTCTTT | |
| 27 TTGATGAGATGCAATTTGGAATTGTACATCGCAAAATTATCTCGGACCCAAGTGGCAGCT | |
| 28 ATATTTAGGGGAAGTGCCTCTCCTAAGGTTAGAAATTCGGTGATGCACTGCAGGTCGATG | |
| 29 CGGTTGAGTTCGTGTGGGTGCTTTATTTCCTCCATCTCAAGTTCTCTTTCTGCACCACTT | |
| 30 TGGATTCTAGAGTTTTCGTTGTCGTCAGTAGCTACATTCCCTTCCCCTTCTTCCCTAGAG | |
| 31 AGAAATAGAACATCACAGGGACGGGAGAGAAAATCAGCGAGAACATTTGCTTTTCCGCGA | |
| 32 CGGTAGATAATCCTGATATTAAAATGCTCTATAGCATCTAAAAAACGGACCATTCTGACG | |
| 33 GGCTGCTCGGCTTTGGTCTGAATAGTTCGTAGAGATTCATGGTCAGTTATCACCGTTACG | |
| 34 TCGCCGCCTTCTACCCAGTGACGCCAATGTTGTAGTGACAGTAAAATCCCAAGTAATTCC | |
| 35 CTCTCTTGTGCTGAATAACGCTGCTGGGTATCGTTTAGTTTTCTTGAGAAGTAAGCTATG | |
| 36 GGATGCAGCACTGAACGATCGGAATTGTTGGAGCATCGCATGTACGGTTGGAGTATGACT | |
| 37 GCACCCACGAACTTTTGGGAAGCGTCAGTTTCCAATATGACGGGAAGTCTCCAATCAAAT | |
| 38 TTTTTTACAACTGGTGATGTTGTAAGCGCTAGTTTGATACTTTTCCATGATTGAATCGAT | |
| 39 TGGTCCGTCAGAATGACAGGGCAATTTTTAGGTCCAGAGGATTGGTCCGTGAGTGGCCCT | |
| 40 GCTAGTTGGGAGAAATTTTTAATGAGACAACGTAGGTAACCAGCTGCATTTACAAATCCT | |
| 41 CTTATTTCCGAGGTAGTTGTTGGCATAGGCCTGTCTCTGATCGCTGAAACTTTTTCGGGG | |
| 42 TCTGCTGCAATGCCATGTTTAGAAATATGGAAACCAAGGAAGATTCCCTCTGAAACAAAT | |
| 43 AGCCTGCACTTTGAAGCATTGAGGAGGAGACCATAGGAAGCGAATCTAGAAAAAATAAGT | |
| 44 ATCAACCGTGAGTGCAATTCTGCCATTGAGTCTGCCCAGACAGCTACATCGTCCAGGAGC | |
| 45 CCTGCGACAAATGGACGGAATGGCTCTAGAACTTCTTCCATAAAACACTGGAAAGTAGCT | |
| 46 GGTGCGTTGCATAGGCCGAAAGGCATAACTAGCCATTCATAGACACCGAAAGGAGTCACA | |
| 47 AATGCTGTTTTCTCTGAAGAGTCTTTGTGCATACGTATCTGCCAAAATCCGTTTTCCAGG | |
| 48 TCGAGGAATGCATAGAAGTTATGTCCTGCTGCGCGCTGAATTTCATCTTGAGCATTTGGT | |
| 49 AGGGGATGGGCGTGTTTCTTCGTAATCTTGTTAAGCTCTCTATAGTCAACACAAATACGC | |
| 50 CAAACGGTTTGGTTAGTCTGGGTTAGCGTCTTTTTTTGGTGTTAATAACAGAGGTGCAGC | |
| 51 CCATGGTCCCTTACATTTGCGTATGAATTGAGCCGGTCATGTGTTGCACAAGAAAGTCCC | |
| 52 CGGATGGCTTGTTGTTGCGCCGGGGCTATATCGCCTCGGAGGGGAGTTTTAAATTGGGTT | |
| 53 GACAATTACCCCGTTTCTATGCGGGTGTTTCTGTCTTGGGAGAGTTTTATCCCATTTGGC | |
| 54 GGGAGAGATTTATCGAAAAGTTGAAGGGGAATTTAACTTTGATATTGTAGGGAAAAACTG | |
| 55 TAATGCGGAATGAAGGGTGGGCTGGGTGCCATTTGACCATTGGAATATTTGAAGTAGTGA | |
| 56 AGACTTTTCGGTTTGGGAGAGTATTAATTATAGGATTAAGAATTGGTTGGTCAATTAAGT | |
| 57 TGAGAAGTTGCAGTTTGCCATTTGATAAACATCGTAGCCCCAGTTCATGGAATAAAGTTT | |
| 58 GTCCAAGTGTCACATCTGCTGGGAATGTGCCATCTGGGACAACTCCTAGAGACACTGTGA | |
| 59 ATTCCTGAGTCCAGAATGATTCAAGGTGATTCGAGCAAAGAAACTGTGCAGTTAAAATTG | |
| 60 CATCCTTAGAAATTGTTGGGCCAGGGCCACCAATGCCTGACATTTTAGAAATAATAGATG | |
| 61 TATTATAAGAAGTCAAATATTTAGAGAAAGACTGTGAAACATAACATGCTGAAGAGCCGT | |
| 62 AGTCAAAAAAAACTGAAAATTGGACATAGGGAAAATGAGTTATTCGTGCAAAAAACATTC | |
| 63 TGTGTGGCTTGCCATATCCTTCCCGTAGAGGTTGTCCTTTTGGGGGTGGCTCAAATTTGC | |
| 64 CCTTTCCTACGGCCACAAAGTAGGTATTCGGGCTGTCCTATTCATAAATTTCTTCATTTC | |
| 65 GCATTCGATATAGAATGGCTTCAATTTCGTCATCGAGCTGCTCATCTTCTATTTGGCCTT | |
| 66 CAGGGCTTATTTGCTCTTGATCCAAATCTTCTGGCTCAACAAGGAAAGTAGAAGTGACAG | |
| 67 GCTTTGATGAACGATCGTGTGGTGTTACAGGTTTTACATATTTTTTATTTTTCATTGATT | |
| 68 GGTAAGTTTTCCTGAATTTATCGCTGAAACGCGACGAGGTGTATTTAGCGTTTGGTGCAT | |
| 69 ATTCCCTTTGTTCTTTTGATTCCACCGGCGCTGTTTTCATCAACCGGCAGTCTTTCGCCC | |
| 70 AGTGGCCTGTCTTTCCGCAATTGAAGCATTCGTAACGCTTGTCGTGAATTGGGTATGATT | |
| 71 TATCTGTTTCTGCAATGTCTTGTGACGCAAAGACGTCTTGCCCATACGACCTTGGATCAG | |
| 72 CTATGGATGCGTCAAATGCTGGAAGCTTTTCGCCTTTTGACGCTGAGATCGGAATTGGTG | |
| 73 CATTGGACTCGGAATGTTTGAATACATCATCCTCAAGTGTCCACCTTGTAATACCGCGTG | |
| 74 TGACTTGAACCACTCGATCCGCAAGCTCCGCGCTGGTGAGTTTGGGGAGATTATTGGAAA | |
| 75 TGATGGTCCAGGTACGTGGAAGTGAGAGTCGAATATGCTGCCTCAGTATATCTCTAGTCT | |
| 76 GAGGCCCTACCATGACATCCGAAGGTAGGCTAAAGAAAGCTTTCCGGAGTCGTCGCGCAA | |
| 77 ATTGTAATTGAGTCTCGTCGTTTCTTGCAGTTATTCGTGCAAATGTTGTCAAAGGCGACC | |
| 78 CGAGTACATCATTGTCGAACAGTATTTTAAGGATACAGTCTACAGCTCCTGCCCAATCGA | |
| 79 GGTGTTGACTGATGATTGTTCTTCGCGCCGAGATGAAATCTTCATCCATTTCCATTGCAA | |
| 80 TTCTGATAGCCCAAGCAGAATATGGAAGCATATGTTGAATCATCAATGATTGCATGTGGT | |
| 81 ATAATATATTCATTATGTTCTCATCAGCAAAGTGCAATTTCCATTGTGGTGGGAATACCG | |
| 82 CGCGTGTTTTTCTATTTGCCTCTTTTAAAGGGCCGTGCGGATTTTCAGCTTCGGAACGCG | |
| 83 AAAAGAAATCTGGGAAGTACCGCTTTATTTTTCGCTCTTGTTCAGTAACATTCAATGGTT | |
| 84 CGTTAACTGACTGGCGGTATAAATTAATAGTCCCATCTTTGTTTTGCTCATCATTGCTTA | |
| 85 GGTTGGGCGTTGTTTCATAGAATTGCGCCGAGGTAAAGGGTCTTTTCTTAGGCTGAAACA | |
| 86 CGATTGGCCTGGTTGCGGGTCGCGAGGCGCTGCCTGCTGAAAAGTCAAATAGCTCCTCCC | |
| 87 GGTATGGTTTTTTATTTTCAGATGGCCCTGCTTCCGAAAGTTGAAAGGGGACTGAATTTT | |
| 88 TCGAAGAAGTTTTTGTTTCCACGTCTTCATTTCTACTTACTAGTTTGGAAATTAAGTCGT | |
| 89 TCATTGCAGACATTTGTTTGACTAGAAGAGAAATTTGTGATTGGGTCTCTTCAAACCTTT | |
| 90 GATCGATTCTCTTGGAGAGATCTTTTGTCACTGCCTTTGCAGCTTCATTAGCTTCGGAAA | |
| 91 AATTTTCGTTGGCTTTGGTTTGCCCGGCAATGTGATCCTTCATCAAGCTTTCCAACTGAG | |
| 92 CATTATTCAGGCCGACCATGATGATTGAATAGGTGGTGAAATGCGTAAAAAATTTGGAGA | |
| 93 CGTCTTAAATTGGGATGACCTAGAATTGTGAGGTTCTCTCAACAAAAATATATAATTTTG | |
| 94 TGGCTTCTAGTTGATCAGTTTATGATCACAATGATTTCACGTAGGTGTCTCGTGGCTCCG | |
| 95 ACAAATCAACAATATAATGCGAGTAGAGCTTGAGACTAATAAAACGTGAATTTCATTCTA | |
| 96 TAATACAGGACCGCCAACTTATTTAAATATTCCCCCGCACCACGTGAGCCAATCAACAGC | |
| 97 ACACAATTTGCACGGTCGGGTTTCCATCAATTGGGATCCACA | |
| 98 >blumeria_Grouper_14770_3 | |
| 99 GGTTAGACCGATACAGTAAGTCTCGTATGAAGTTGTGGAAGGAAGAATTGACTGGAAACA | |
| 100 AGTGTATTGAGATGTATGGTTCTGAGTAAAACTGAGCTGATAAGAGTGAGATTGCGTGTG | |
| 101 CGCATATCTTATCAACTGAGGTTTTTGACCAGTATTTATCAATCTCCATGGATCATAAGT | |
| 102 TATGATCCCTGTAGATGTAAATCTATATACGTACAGATATATGAGCCAGAAATATAAAGC | |
| 103 TAAATACATGTGTGTCGGTAATAGATCCGAGAAACCTTTAACCTGCATTTGATACATAAT | |
| 104 CATCTGATGGAATGCTAGTGTGAAATAAATGCCAATGTACGTTAAACTTTCCGTGAGGAA | |
| 105 TGTGCTGATGACAATGATATAGGAAGGTGAATTTGATAACCTAATTAGCCGGACTTACAA | |
| 106 ATGAGTTATCCTTGGCATTCCAGGATATACAATATTTCAACACCCCTCCTCACTTTGCAT | |
| 107 CGAGGATAGATACATAAGTGAAAAACTGTTAGTATATTTATTGTCATTTCTCATCTAATG | |
| 108 CTGGTATGGTAGACACGCCAGTGGTTGTACTAGTACCAAAAACTGAAGTGCATAAATCGG | |
| 109 TGTGCCTTGGTCTCGGTAAGCCTTTTGTACATATATCTGCGAGATTTTTAGCTGAAGGAA | |
| 110 CATGTAATAGTGTAAGCGAGCCGTCTTCAATTCTTTCCCTTGTAAAATGATAAGCGATGT | |
| 111 CGATATGTTTAGAAGCATCATTTAGTTTTGGATTGTGAGCAAGTTCAATGGCAGCCGTAT | |
| 112 TGTCAGTCGAGATTGCTGCTGGGATGCTGTCTCCAAGGAATCGGTGAAGTCCGCGCAAAA | |
| 113 TCCAGATATATTGTTTGGATGCGAGCGCTATTGCCATGTACTCAGCTTCGCAGGTTGAAT | |
| 114 G | |
| 115 >blumeria_Grouper_1717_12 | |
| 116 ATTTCCAGTATCTTGCCCTGAAGGGCCAGTAAGTCCTGATCGAATAGTTTTCGAAGTCTC | |
| 117 TCGTCAGTGACTGGTTCCAACAGCTTGCAGAACCCAATGATGAAGCGCTCTGCTTGTGCG | |
| 118 GAGCGCGTCTGGAATATCCTGCCCTGTTCGGCGAGGAATTTGGTCGCGACGATTTGAGGC | |
| 119 GACGGAGTTTGTTGGTGCGGTGAGCTTCGATGACTCGCCTCGTAGATTGGCTCTACAAAT | |
| 120 TGTTGTGTGGGTTGTTGTGATGGCGGTTGTGGCCCGTTAAGGACCATTTCGACGTCTTGA | |
| 121 CGCGTCGAACATTGAGTTGGGAGGGGGGGCCAAGAGCCAGCCTCTGCGGAGGACTGGGGC | |
| 122 GGCATGAGTGAGTGAGGTTTGTGGCAGTGTGAGATCGTAGATGGTATACGGCGCGCTTGA | |
| 123 AGGG | |
| 124 |