Mercurial > repos > yufei-luo > s_mart

comparison SMART/Java/Python/CountLoci.py @ 46:169d364ddd91

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author m-zytnicki
date Mon, 30 Sep 2013 03:19:26 -0400
parents 94ab73e8a190
children
comparison
equal deleted inserted replaced
45:e454402ba9d9 46:169d364ddd91
83 def _getReferenceFiles(self): 83 def _getReferenceFiles(self):
84 self.referenceFiles = {"CDS": "%scds.gff3" % (self.outputBase), \ 84 self.referenceFiles = {"CDS": "%scds.gff3" % (self.outputBase), \
85 "five_prime_UTR": "%sfive.gff3" % (self.outputBase), \ 85 "five_prime_UTR": "%sfive.gff3" % (self.outputBase), \
86 "three_prime_UTR": "%sthree.gff3" % (self.outputBase), \ 86 "three_prime_UTR": "%sthree.gff3" % (self.outputBase), \
87 "mRNA": "%smrna.gff3" % (self.outputBase), \ 87 "mRNA": "%smrna.gff3" % (self.outputBase), \
88 "ncRNA": "%sncRNA.gff3" % (self.outputBase), \ 88 "ncRNA": "%sncRNA.gff3" % (self.outputBase), \
89 "transposable_element_gene": "%sTE.gff3" % (self.outputBase), \ 89 "transposable_element_gene": "%sTE.gff3" % (self.outputBase), \
90 "vic": "%svicinity.gff3" % (self.outputBase)} 90 "vic": "%svicinity.gff3" % (self.outputBase)}
91 self.tmpFileNames.extend(self.referenceFiles.values()) 91 self.tmpFileNames.extend(self.referenceFiles.values())
92 for tag, fileName in self.referenceFiles.iteritems(): 92 for tag, fileName in self.referenceFiles.iteritems():
93 if tag == "ncRNA": 93 if tag == "ncRNA":