Mercurial > repos > yufei-luo > s_mart
comparison SMART/Java/Python/ncList/NCList.py @ 46:169d364ddd91
Uploaded
| author | m-zytnicki |
|---|---|
| date | Mon, 30 Sep 2013 03:19:26 -0400 |
| parents | 769e306b7933 |
| children |
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| 45:e454402ba9d9 | 46:169d364ddd91 |
|---|---|
| 106 | 106 |
| 107 def setOffset(self, fileType, offset): | 107 def setOffset(self, fileType, offset): |
| 108 self._offsets[fileType] = offset | 108 self._offsets[fileType] = offset |
| 109 | 109 |
| 110 def _setFileNames(self, fileName): | 110 def _setFileNames(self, fileName): |
| 111 print "Got file name", fileName | |
| 111 if self._chromosome != None and fileName != None: | 112 if self._chromosome != None and fileName != None: |
| 112 coreName = os.path.splitext(fileName)[0] | 113 coreName = os.path.splitext(fileName)[0] |
| 113 if "SMARTTMPPATH" in os.environ: | 114 if "SMARTTMPPATH" in os.environ: |
| 114 coreName = os.path.join(os.environ["SMARTTMPPATH"], coreName) | 115 coreName = os.path.join(os.environ["SMARTTMPPATH"], coreName) |
| 116 print "Used core name", coreName | |
| 115 self._hFileName = "%s_H.bin" % (coreName) | 117 self._hFileName = "%s_H.bin" % (coreName) |
| 116 self._lFileName = "%s_L.bin" % (coreName) | 118 self._lFileName = "%s_L.bin" % (coreName) |
| 117 self._tFileName = "%s_T.bin" % (coreName) | 119 self._tFileName = "%s_T.bin" % (coreName) |
| 118 self._fileNameDict = {H: self._hFileName, L: self._lFileName, T: self._tFileName} | 120 self._fileNameDict = {H: self._hFileName, L: self._lFileName, T: self._tFileName} |
| 119 | 121 |