Mercurial > repos > yufei-luo > s_mart

comparison tool_conf.xml @ 46:169d364ddd91

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Uploaded
author m-zytnicki
date Mon, 30 Sep 2013 03:19:26 -0400
parents 44d5973c188c
children b6481845eb0d
comparison
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45:e454402ba9d9 46:169d364ddd91
1 <section id="s_mart" name="S-MART" version=""> 1 <section id="s_mart" name="S-MART" version="3.0">
2 <label id="Smart_Comparison" text="Comparison Tools" version=""/> 2 <label id="Smart_Comparison" text="Comparison Tools" version="3.0"/>
3 <tool file="s_mart/CompareOverlappingSmallQuery.xml"/> 3 <tool file="s_mart/CompareOverlappingAdapt.xml"/>
4 <tool file="s_mart/CompareOverlappingSmallRef.xml"/>
5 <tool file="s_mart/compareOverlapping.xml"/>
6 <tool file="s_mart/getDifference.xml"/> 4 <tool file="s_mart/getDifference.xml"/>
7 <tool file="s_mart/computeCoverage.xml"/> 5 <tool file="s_mart/computeCoverage.xml"/>
8 <tool file="s_mart/GetFlanking.xml"/> 6 <tool file="s_mart/GetFlanking.xml"/>
9 <tool file="s_mart/GetDifferentialExpression.xml"/> 7 <tool file="s_mart/GetDifferentialExpression.xml"/>
10 <label id="Smart_Merge" text="Merge Tools" version=""/> 8 <label id="Smart_Merge" text="Merge Tools" version="3.0"/>
11 <tool file="s_mart/clusterize.xml"/> 9 <tool file="s_mart/clusterize.xml"/>
12 <tool file="s_mart/mergeTranscriptLists.xml"/> 10 <tool file="s_mart/mergeTranscriptLists.xml"/>
13 <tool file="s_mart/CollapseReads.xml"/> 11 <tool file="s_mart/CollapseReads.xml"/>
14 <tool file="s_mart/clusterizeBySlidingWindows.xml"/> 12 <tool file="s_mart/clusterizeBySlidingWindows.xml"/>
15 <tool file="s_mart/mergeSlidingWindowsClusters.xml"/> 13 <tool file="s_mart/mergeSlidingWindowsClusters.xml"/>
16 <label id="Smart_Visualization" text="Visualization Tools" version=""/> 14 <label id="Smart_Visualization" text="Visualization Tools" version="3.0"/>
17 <tool file="s_mart/getDistribution.xml"/> 15 <tool file="s_mart/getDistribution.xml"/>
18 <tool file="s_mart/getDistance.xml"/> 16 <tool file="s_mart/getDistance.xml"/>
19 <tool file="s_mart/getSizes.xml"/> 17 <tool file="s_mart/getSizes.xml"/>
20 <tool file="s_mart/plotCoverage.xml"/> 18 <tool file="s_mart/plotCoverage.xml"/>
21 <tool file="s_mart/WrappGetLetterDistribution1.xml"/> 19 <tool file="s_mart/WrappGetLetterDistribution1.xml"/>
22 <tool file="s_mart/plotTranscriptList.xml"/> 20 <tool file="s_mart/plotTranscriptList.xml"/>
23 <label id="Smart_Sequence" text="Sequence Tools" version=""/> 21 <label id="Smart_Sequence" text="Sequence Tools" version="3.0"/>
24 <tool file="s_mart/CountReadGCPercent.xml"/> 22 <tool file="s_mart/CountReadGCPercent.xml"/>
25 <label id="Smart_Modification" text="Modification Tools" version=""/> 23 <label id="Smart_Modification" text="Modification Tools" version="3.0"/>
26 <tool file="s_mart/modifyGenomicCoordinates.xml"/> 24 <tool file="s_mart/modifyGenomicCoordinates.xml"/>
27 <tool file="s_mart/modifySequenceList.xml"/> 25 <tool file="s_mart/modifySequenceList.xml"/>
28 <tool file="s_mart/trimSequences.xml"/> 26 <tool file="s_mart/trimSequences.xml"/>
29 <label id="Smart_Selection" text="Selection Tools" version=""/> 27 <label id="Smart_Selection" text="Selection Tools" version="3.0"/>
30 <tool file="s_mart/getExons.xml"/> 28 <tool file="s_mart/getExons.xml"/>
31 <tool file="s_mart/getIntrons.xml"/> 29 <tool file="s_mart/getIntrons.xml"/>
32 <tool file="s_mart/restrictFromSize.xml"/> 30 <tool file="s_mart/restrictFromSize.xml"/>
33 <tool file="s_mart/restrictTranscriptList.xml"/> 31 <tool file="s_mart/restrictTranscriptList.xml"/>
34 <label id="Smart_Conversion" text="Conversion Tools" version=""/> 32 <label id="Smart_Conversion" text="Conversion Tools" version="3.0"/>
35 <tool file="s_mart/ConvertTranscriptFile.xml"/> 33 <tool file="s_mart/ConvertTranscriptFile.xml"/>
36 <tool file="s_mart/coordinatesToSequence.xml"/> 34 <tool file="s_mart/coordinatesToSequence.xml"/>
37 <tool file="s_mart/mapperAnalyzer.xml"/> 35 <tool file="s_mart/mapperAnalyzer.xml"/>
38 <label id="Smart_WIG" text="WIG Manipulation Tools" version=""/> 36 <label id="Smart_WIG" text="WIG Manipulation Tools" version="3.0"/>
39 <tool file="s_mart/getWigData.xml"/> 37 <tool file="s_mart/getWigData.xml"/>
40 <tool file="s_mart/getWigDistance.xml"/> 38 <tool file="s_mart/getWigDistance.xml"/>
41 <tool file="s_mart/getWigProfile.xml"/> 39 <tool file="s_mart/getWigProfile.xml"/>
42 <label id="Smart_GFF" text="GFF Manipulation Tools" version=""/> 40 <label id="Smart_GFF" text="GFF Manipulation Tools" version="3.0"/>
43 <tool file="s_mart/CleanTranscriptFile.xml"/> 41 <tool file="s_mart/CleanTranscriptFile.xml"/>
44 <tool file="s_mart/changeTagName.xml"/> 42 <tool file="s_mart/changeTagName.xml"/>
45 <tool file="s_mart/changeGffFeatures.xml"/> 43 <tool file="s_mart/changeGffFeatures.xml"/>
46 <tool file="s_mart/removeExonLines.xml"/>
47 <tool file="s_mart/SelectByTag.xml"/> 44 <tool file="s_mart/SelectByTag.xml"/>
48 </section> 45 </section>