Mercurial > repos > yufei-luo > s_mart
comparison tool_conf.xml @ 36:44d5973c188c
Uploaded
| author | m-zytnicki |
|---|---|
| date | Tue, 30 Apr 2013 15:02:29 -0400 |
| parents | |
| children | 169d364ddd91 |
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| 35:d94018ca4ada | 36:44d5973c188c |
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| 1 <section id="s_mart" name="S-MART" version=""> | |
| 2 <label id="Smart_Comparison" text="Comparison Tools" version=""/> | |
| 3 <tool file="s_mart/CompareOverlappingSmallQuery.xml"/> | |
| 4 <tool file="s_mart/CompareOverlappingSmallRef.xml"/> | |
| 5 <tool file="s_mart/compareOverlapping.xml"/> | |
| 6 <tool file="s_mart/getDifference.xml"/> | |
| 7 <tool file="s_mart/computeCoverage.xml"/> | |
| 8 <tool file="s_mart/GetFlanking.xml"/> | |
| 9 <tool file="s_mart/GetDifferentialExpression.xml"/> | |
| 10 <label id="Smart_Merge" text="Merge Tools" version=""/> | |
| 11 <tool file="s_mart/clusterize.xml"/> | |
| 12 <tool file="s_mart/mergeTranscriptLists.xml"/> | |
| 13 <tool file="s_mart/CollapseReads.xml"/> | |
| 14 <tool file="s_mart/clusterizeBySlidingWindows.xml"/> | |
| 15 <tool file="s_mart/mergeSlidingWindowsClusters.xml"/> | |
| 16 <label id="Smart_Visualization" text="Visualization Tools" version=""/> | |
| 17 <tool file="s_mart/getDistribution.xml"/> | |
| 18 <tool file="s_mart/getDistance.xml"/> | |
| 19 <tool file="s_mart/getSizes.xml"/> | |
| 20 <tool file="s_mart/plotCoverage.xml"/> | |
| 21 <tool file="s_mart/WrappGetLetterDistribution1.xml"/> | |
| 22 <tool file="s_mart/plotTranscriptList.xml"/> | |
| 23 <label id="Smart_Sequence" text="Sequence Tools" version=""/> | |
| 24 <tool file="s_mart/CountReadGCPercent.xml"/> | |
| 25 <label id="Smart_Modification" text="Modification Tools" version=""/> | |
| 26 <tool file="s_mart/modifyGenomicCoordinates.xml"/> | |
| 27 <tool file="s_mart/modifySequenceList.xml"/> | |
| 28 <tool file="s_mart/trimSequences.xml"/> | |
| 29 <label id="Smart_Selection" text="Selection Tools" version=""/> | |
| 30 <tool file="s_mart/getExons.xml"/> | |
| 31 <tool file="s_mart/getIntrons.xml"/> | |
| 32 <tool file="s_mart/restrictFromSize.xml"/> | |
| 33 <tool file="s_mart/restrictTranscriptList.xml"/> | |
| 34 <label id="Smart_Conversion" text="Conversion Tools" version=""/> | |
| 35 <tool file="s_mart/ConvertTranscriptFile.xml"/> | |
| 36 <tool file="s_mart/coordinatesToSequence.xml"/> | |
| 37 <tool file="s_mart/mapperAnalyzer.xml"/> | |
| 38 <label id="Smart_WIG" text="WIG Manipulation Tools" version=""/> | |
| 39 <tool file="s_mart/getWigData.xml"/> | |
| 40 <tool file="s_mart/getWigDistance.xml"/> | |
| 41 <tool file="s_mart/getWigProfile.xml"/> | |
| 42 <label id="Smart_GFF" text="GFF Manipulation Tools" version=""/> | |
| 43 <tool file="s_mart/CleanTranscriptFile.xml"/> | |
| 44 <tool file="s_mart/changeTagName.xml"/> | |
| 45 <tool file="s_mart/changeGffFeatures.xml"/> | |
| 46 <tool file="s_mart/removeExonLines.xml"/> | |
| 47 <tool file="s_mart/SelectByTag.xml"/> | |
| 48 </section> |