comparison tool_conf.xml @ 36:44d5973c188c

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author m-zytnicki
date Tue, 30 Apr 2013 15:02:29 -0400
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children 169d364ddd91
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35:d94018ca4ada 36:44d5973c188c
1 <section id="s_mart" name="S-MART" version="">
2 <label id="Smart_Comparison" text="Comparison Tools" version=""/>
3 <tool file="s_mart/CompareOverlappingSmallQuery.xml"/>
4 <tool file="s_mart/CompareOverlappingSmallRef.xml"/>
5 <tool file="s_mart/compareOverlapping.xml"/>
6 <tool file="s_mart/getDifference.xml"/>
7 <tool file="s_mart/computeCoverage.xml"/>
8 <tool file="s_mart/GetFlanking.xml"/>
9 <tool file="s_mart/GetDifferentialExpression.xml"/>
10 <label id="Smart_Merge" text="Merge Tools" version=""/>
11 <tool file="s_mart/clusterize.xml"/>
12 <tool file="s_mart/mergeTranscriptLists.xml"/>
13 <tool file="s_mart/CollapseReads.xml"/>
14 <tool file="s_mart/clusterizeBySlidingWindows.xml"/>
15 <tool file="s_mart/mergeSlidingWindowsClusters.xml"/>
16 <label id="Smart_Visualization" text="Visualization Tools" version=""/>
17 <tool file="s_mart/getDistribution.xml"/>
18 <tool file="s_mart/getDistance.xml"/>
19 <tool file="s_mart/getSizes.xml"/>
20 <tool file="s_mart/plotCoverage.xml"/>
21 <tool file="s_mart/WrappGetLetterDistribution1.xml"/>
22 <tool file="s_mart/plotTranscriptList.xml"/>
23 <label id="Smart_Sequence" text="Sequence Tools" version=""/>
24 <tool file="s_mart/CountReadGCPercent.xml"/>
25 <label id="Smart_Modification" text="Modification Tools" version=""/>
26 <tool file="s_mart/modifyGenomicCoordinates.xml"/>
27 <tool file="s_mart/modifySequenceList.xml"/>
28 <tool file="s_mart/trimSequences.xml"/>
29 <label id="Smart_Selection" text="Selection Tools" version=""/>
30 <tool file="s_mart/getExons.xml"/>
31 <tool file="s_mart/getIntrons.xml"/>
32 <tool file="s_mart/restrictFromSize.xml"/>
33 <tool file="s_mart/restrictTranscriptList.xml"/>
34 <label id="Smart_Conversion" text="Conversion Tools" version=""/>
35 <tool file="s_mart/ConvertTranscriptFile.xml"/>
36 <tool file="s_mart/coordinatesToSequence.xml"/>
37 <tool file="s_mart/mapperAnalyzer.xml"/>
38 <label id="Smart_WIG" text="WIG Manipulation Tools" version=""/>
39 <tool file="s_mart/getWigData.xml"/>
40 <tool file="s_mart/getWigDistance.xml"/>
41 <tool file="s_mart/getWigProfile.xml"/>
42 <label id="Smart_GFF" text="GFF Manipulation Tools" version=""/>
43 <tool file="s_mart/CleanTranscriptFile.xml"/>
44 <tool file="s_mart/changeTagName.xml"/>
45 <tool file="s_mart/changeGffFeatures.xml"/>
46 <tool file="s_mart/removeExonLines.xml"/>
47 <tool file="s_mart/SelectByTag.xml"/>
48 </section>