Mercurial > repos > yufei-luo > s_mart
comparison SMART/galaxy/removeIntrons.xml @ 58:5f5c9b74c2dd
Uploaded
| author | m-zytnicki |
|---|---|
| date | Fri, 07 Feb 2014 11:53:36 -0500 |
| parents | 97aa2e42bfdf |
| children | 2a4884ba3e5c |
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| 57:36eaa579fdb6 | 58:5f5c9b74c2dd |
|---|---|
| 4 <requirement type="set_environment">PYTHONPATH</requirement> | 4 <requirement type="set_environment">PYTHONPATH</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command interpreter="python"> ../Java/Python/RemoveExons.py -i $formatType.inputFileName -f $formatType.FormatInputFileName -o $outputFile </command> | 6 <command interpreter="python"> ../Java/Python/RemoveExons.py -i $formatType.inputFileName -f $formatType.FormatInputFileName -o $outputFile </command> |
| 7 <inputs> | 7 <inputs> |
| 8 <conditional name="formatType"> | 8 <conditional name="formatType"> |
| 9 <param name="FormatInputFileName1" type="select" label="query File Format"> | 9 <param name="FormatInputFileName" type="select" label="query File Format"> |
| 10 <option value="bed">bed</option> | 10 <option value="bed">bed</option> |
| 11 <option value="gff">gff</option> | 11 <option value="gff">gff</option> |
| 12 <option value="gff2">gff2</option> | 12 <option value="gff2">gff2</option> |
| 13 <option value="gff3">gff3</option> | 13 <option value="gff3">gff3</option> |
| 14 <option value="sam">sam</option> | 14 <option value="sam">sam</option> |