comparison SMART/galaxy/ConvertTranscriptFile_BedToSam.xml @ 6:769e306b7933

Change the repository level.
author yufei-luo
date Fri, 18 Jan 2013 04:54:14 -0500
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5:ea3082881bf8 6:769e306b7933
1 <tool id="ConvertTranscriptFile_BedToSam" name="Bed -> Sam">
2 <description>Convert Bed File to Sam File.</description>
3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f bed -o $outputFile -g sam yes 2>$logFile </command>
4 <inputs>
5 <param name="inputFile" type="data" label="Input File" format="bed"/>
6 </inputs>
7
8 <outputs>
9 <data format="sam" name="outputFile" label="[bed -> sam] Output File"/>
10 <data format="txt" name="logFile" label="[bed -> sam] Log File"/>
11 </outputs>
12
13 <help>
14 </help>
15 </tool>