Mercurial > repos > yufei-luo > s_mart
comparison SMART/galaxy/CompareOverlappingAdapt.xml @ 64:783e6ed4eb66
Minor bug correction.
Added casts to str in Galaxy XML files. Also closed the writer in the Python script "changeTagName."
| author | m-zytnicki |
|---|---|
| date | Mon, 19 Oct 2015 14:16:44 +0200 |
| parents | 90f4b29d884f |
| children |
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| 63:5f210bc9f486 | 64:783e6ed4eb66 |
|---|---|
| 6 <command interpreter="python"> | 6 <command interpreter="python"> |
| 7 ../Java/Python/CompareOverlappingAdapt.py -i $formatType.inputFileName1 -f $formatType.FormatInputFileName1 -j $formatType2.inputFileName2 -g $formatType2.FormatInputFileName2 -o $outputFileGff $InvertMatch $NotOverlapping -m $NbOverlap | 7 ../Java/Python/CompareOverlappingAdapt.py -i $formatType.inputFileName1 -f $formatType.FormatInputFileName1 -j $formatType2.inputFileName2 -g $formatType2.FormatInputFileName2 -o $outputFileGff $InvertMatch $NotOverlapping -m $NbOverlap |
| 8 #if $OptionDistance.Dist == 'Yes': | 8 #if $OptionDistance.Dist == 'Yes': |
| 9 -d $OptionDistance.distance | 9 -d $OptionDistance.distance |
| 10 #end if | 10 #end if |
| 11 #if $OptionCA == 'Collinear': | 11 #if str($OptionCA) == 'Collinear': |
| 12 -c | 12 -c |
| 13 #elif $OptionCA == 'AntiSense': | 13 #elif str($OptionCA) == 'AntiSense': |
| 14 -a | 14 -a |
| 15 #end if | 15 #end if |
| 16 </command> | 16 </command> |
| 17 | 17 |
| 18 <inputs> | 18 <inputs> |