Mercurial > repos > yufei-luo > s_mart

comparison SMART/Java/Python/CompareOverlappingSmallRef.py @ 60:90f4b29d884f

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Uploaded
author m-zytnicki
date Fri, 21 Feb 2014 08:32:36 -0500
parents 2ac71607aa60
children
comparison
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59:2a4884ba3e5c 60:90f4b29d884f
233 cosr.setReferenceFile(options.inputFileName2, options.format2) 233 cosr.setReferenceFile(options.inputFileName2, options.format2)
234 cosr.setOutputFile(options.outputFileName) 234 cosr.setOutputFile(options.outputFileName)
235 cosr.includeNotOverlapping(options.notOverlapping) 235 cosr.includeNotOverlapping(options.notOverlapping)
236 cosr.setDistance(options.distance) 236 cosr.setDistance(options.distance)
237 cosr.setAntisense(options.antisense) 237 cosr.setAntisense(options.antisense)
238 cosr.setCollinear(options.collinear)
238 cosr.setInvert(options.exclude) 239 cosr.setInvert(options.exclude)
239 cosr.setMinPercentOverlap(options.pcOverlapQuery, options.pcOverlapRef) 240 cosr.setMinPercentOverlap(options.pcOverlapQuery, options.pcOverlapRef)
240 cosr.setMinOverlap(options.minOverlap) 241 cosr.setMinOverlap(options.minOverlap)
241 cosr.run() 242 cosr.run()
242 243